Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0854.Seq
         (726 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   3.9  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   5.1  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   9.0  

>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
 Frame = -2

Query: 179 ASEEFAFVVTPSIVLHHVPM----ISLQHRKNWIFRRISTAVQSESEQNNIGRAYLINKT 12
           AS   A ++T  IVL  + +    ISL    +W+  RI T++    +    G  Y ++K 
Sbjct: 439 ASIPSAALITMLIVLTALGLPTNDISLLFAVDWMLDRIRTSINVLGDGYGAGIVYHLSKA 498

Query: 11  RL 6
            L
Sbjct: 499 EL 500


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 594 FIICLTSFFCVKL 556
           F+IC   FFCV +
Sbjct: 281 FLICWVPFFCVNI 293


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -1

Query: 435 HSIVEAAHQTARGGFDWPICLEKNRGLWRARRMYFPHY 322
           ++I+  + Q      DWP   +  RG+  A R   P Y
Sbjct: 574 NTIIRNSQQAPGQSPDWPSTSQIQRGVNAAIRSQEPFY 611


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,545
Number of Sequences: 438
Number of extensions: 4394
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)