Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0852.Seq
         (608 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    36   4e-04
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    24   1.2  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    24   1.2  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       22   4.6  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 35.5 bits (78), Expect = 4e-04
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +1

Query: 109 CLNGGVCFTVVISESPIYNCECQSGYVGPRCEFKDLD 219
           C NGGVC T+       + C C  G+ G  CEF   D
Sbjct: 347 CQNGGVCTTIHAG----HKCTCPEGFYGKNCEFSGYD 379



 Score = 33.1 bits (72), Expect = 0.002
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 109 CLNGGVCFTVVISESPIYNCECQSGYVGPRCE 204
           C NGG C  ++ S    Y+C+C  G+ G  CE
Sbjct: 193 CQNGGTCLDLIGS----YSCKCPKGFQGQNCE 220



 Score = 33.1 bits (72), Expect = 0.002
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +1

Query: 109 CLNGGVCFTVVISESPIYNCECQSGYVGPRCE 204
           C N G C   V      + C+C  G+VGPRCE
Sbjct: 269 CHNNGTCLDKVGG----FECKCPPGFVGPRCE 296



 Score = 33.1 bits (72), Expect = 0.002
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +1

Query: 109 CLNGGVCFTVVISESPIYNCECQSGYVGPRCEFKDLD 219
           C NGGVC    IS+   Y C+C SG  G  CE   ++
Sbjct: 385 CQNGGVCR---ISDGGGYICDCPSGTNGTNCEIDTIN 418



 Score = 30.3 bits (65), Expect = 0.013
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 109 CLNGGVCFTVVISESPIYNCECQSGYVGPRCE 204
           C NGG C  +V S    ++C C SG +G  CE
Sbjct: 231 CQNGGTCHDLVNS----FSCSCPSGTLGYICE 258



 Score = 27.9 bits (59), Expect = 0.071
 Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
 Frame = +1

Query: 109 CLNGGVCFTVVISESPIYNCECQSGYVGPRC-EFKD 213
           CLNG  C       +  Y C C  GY G  C E+ D
Sbjct: 70  CLNGATCQ----DHTTHYTCHCPYGYTGKDCGEYVD 101



 Score = 27.9 bits (59), Expect = 0.071
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 109 CLNGGVCFTVVISESPIYNCECQSGYVGPRCEFK 210
           C N G    V +     Y+C C+ G++G  CE K
Sbjct: 307 CSNAGTLDCVQLVND--YHCNCKLGFMGRHCESK 338



 Score = 24.6 bits (51), Expect = 0.66
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +1

Query: 82  CEPEYSQYYCL-NGGVCFTVVISESPIYNCECQSGYVGPRCEF 207
           C  + +   CL +G  C   +   +PIY+  CQ  Y    C++
Sbjct: 543 CNEDCNNPECLFDGRDCEESLQPCNPIYDAYCQKHYANGLCDY 585



 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +1

Query: 115 NGGVCFTVVISESPIYNCECQSGYVGPRCE 204
           N G C  +  S    + C C  GY G  C+
Sbjct: 157 NNGTCEDIGNS----HRCHCSDGYSGSYCQ 182



 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/18 (38%), Positives = 8/18 (44%)
 Frame = +1

Query: 160 YNCECQSGYVGPRCEFKD 213
           Y C C   + G  CE  D
Sbjct: 439 YACYCPPKHTGKNCEIYD 456


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
 Frame = -3

Query: 417 ETRPPGPATATNVTCPRPQPQET------CRGAAAAPTLRDTQGLPGRPPLSHRPRWTQS 256
           E RP  P++        P   +T      C+  AAA T     G  G PPL+ +     +
Sbjct: 107 EYRPDSPSSMHMANTAAPNGHQTQVVYASCKLQAAAVTQNGVLGPTGSPPLTTQS--MNN 164

Query: 255 HH 250
           HH
Sbjct: 165 HH 166


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
 Frame = -3

Query: 417 ETRPPGPATATNVTCPRPQPQET------CRGAAAAPTLRDTQGLPGRPPLSHRPRWTQS 256
           E RP  P++        P   +T      C+  AAA T     G  G PPL+ +     +
Sbjct: 109 EYRPDSPSSMHMANTAAPNGHQTQVVYDSCKLQAAAVTQNGVLGPTGSPPLTTQS--MNN 166

Query: 255 HH 250
           HH
Sbjct: 167 HH 168


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +1

Query: 178 SGYVGPRCEFKDLDNSYVLSGRQLMMR 258
           SGY+ P+C   D    ++ +  Q  +R
Sbjct: 252 SGYIKPKCVLSDHGTQFISNTWQNSLR 278


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,722
Number of Sequences: 336
Number of extensions: 3003
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15457268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)