Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0852.Seq
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   1.6  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    27   2.1  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   3.7  
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces...    25   6.5  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    25   6.5  
SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch...    25   6.5  
SPMIT.03 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   8.7  
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    25   8.7  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   8.7  

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +2

Query: 278 CDSGGLPGNPCVSRSVGAAAAPRQVSCGCGR 370
           C S    G+PC  R      AP +VSC CGR
Sbjct: 742 CQSPCHAGHPCDERI--PCKAPLEVSCECGR 770


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
            Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +1

Query: 193  PRCEFKDLDNSYVLSGRQLMMRLRPSRAVRQWRSSWQSLCVSERGCGCSAA 345
            PR E   +D SY+       +  +  R  R WR+ W+SL  S RG   + A
Sbjct: 1012 PRTEDSYIDASYLRLRDTDFLDCQNKRKQR-WRNRWESLLKSVRGTSDNTA 1061


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 485  KNLCDNYFRSL*FIMKKFLLYI 550
            KNLC N F+ L F++K  ++ I
Sbjct: 1083 KNLCQNLFKELSFVLKHSVMAI 1104


>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 735

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 390 ATNVTCPRPQPQETCRGAAAAPTLRDTQGLPGRPPL 283
           +T V+  RP+   T   A+AAPT+ + + L  R  L
Sbjct: 37  STRVSAGRPRTLSTSMEASAAPTIPELKNLRRRGSL 72


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -3

Query: 147 RYHNGEADSTIKTVVLRVLGLALKRRESDVD 55
           RYH  EA         R L  +LK+R SD D
Sbjct: 503 RYHRSEAHRRRTKRAFRRLAASLKKRPSDKD 533


>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
 Frame = -3

Query: 306 GLPGRPPLSHRPRWTQSHHQLSAAQHIRVVQVLELAPRAHIPALTLTVINRALRYHN--- 136
           GL   P L H         + ++   + ++ V  LAP   IP     V +R  R+H+   
Sbjct: 348 GLASIPELKHELYMAYIERKTTSLVCLYLLGVESLAPALRIPTALPPVYSRHQRHHSEIL 407

Query: 135 GEADSTIKTVVLR 97
           G  D T K   ++
Sbjct: 408 GAMDLTEKITAMQ 420


>SPMIT.03 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial||Partial|Manual
          Length = 323

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = -1

Query: 503 NYHINFYILSSEHISY 456
           NY  N+++LSS++ISY
Sbjct: 273 NYFDNYHLLSSKYISY 288


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = -2

Query: 340 RCS--RTHAPRHTRIARKTATVAPPAMDAVSSSAVGRSTHTSC 218
           RCS   +H+P H  IA+     APP +   S   V  +  + C
Sbjct: 292 RCSVSDSHSPMHEDIAKACRNAAPPILRHFSFGIVVLAIFSYC 334


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = -2

Query: 346 SRRCSRTHAPRHTRIARKTATVAPPAMDAVSSSAVGRSTHTSCPGP*TRTAGPHTRFDTH 167
           S   + T AP  T +   T TV PP     +++ V  +TH +     T    P T  +T 
Sbjct: 101 SLNTTTTTAPPTTHV-NSTTTVVPPTTHVNTTTVVPPTTHVNT----TTVVPPTTHANTT 155

Query: 166 SY 161
           S+
Sbjct: 156 SF 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,279,669
Number of Sequences: 5004
Number of extensions: 45531
Number of successful extensions: 120
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)