Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0852.Seq
         (608 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to ...    31   0.60 
At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to ...    31   0.60 
At5g10370.1 68418.m01203 helicase domain-containing protein / IB...    31   0.79 
At3g59580.1 68416.m06648 RWP-RK domain-containing protein simila...    29   2.4  
At2g21840.1 68415.m02595 CHP-rich zinc finger protein, putative        29   3.2  
At1g61080.1 68414.m06877 proline-rich family protein                   29   3.2  
At2g45470.1 68415.m05655 fasciclin-like arabinogalactan-protein ...    28   4.2  
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1...    28   4.2  
At1g66190.1 68414.m07513 expressed protein ; expression supporte...    28   4.2  
At4g33350.1 68417.m04741 chloroplast inner membrane import prote...    28   5.6  

>At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to
           nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
           cDNA provides a truncated ORF likely due to a skipped
           exon. An alternative ORF is provided.
          Length = 383

 Score = 31.1 bits (67), Expect = 0.60
 Identities = 20/58 (34%), Positives = 24/58 (41%)
 Frame = -3

Query: 423 WCETRPPGPATATNVTCPRPQPQETCRGAAAAPTLRDTQGLPGRPPLSHRPRWTQSHH 250
           +C   PP  + A N   P P    + R     P      G P RPP +H P W Q HH
Sbjct: 40  FCPPYPPPSSFAYNPNFPPPPHLNSPR-----PGFDSFTGPPVRPPQNHYPPW-QPHH 91


>At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to
           nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
           cDNA provides a truncated ORF likely due to a skipped
           exon. An alternative ORF is provided.
          Length = 661

 Score = 31.1 bits (67), Expect = 0.60
 Identities = 20/58 (34%), Positives = 24/58 (41%)
 Frame = -3

Query: 423 WCETRPPGPATATNVTCPRPQPQETCRGAAAAPTLRDTQGLPGRPPLSHRPRWTQSHH 250
           +C   PP  + A N   P P    + R     P      G P RPP +H P W Q HH
Sbjct: 40  FCPPYPPPSSFAYNPNFPPPPHLNSPR-----PGFDSFTGPPVRPPQNHYPPW-QPHH 91


>At5g10370.1 68418.m01203 helicase domain-containing protein / IBR
           domain-containing protein / zinc finger protein-related
           similar to RNA-dependent ATPase/helicase Cdc28p
           [Schizosaccharomyces pombe] GI:1439562; contains Pfam
           profiles PF04408: Helicase associated domain (HA2),
           PF00271: Helicase conserved C-terminal domain, weak hit
           to PF00097: Zinc finger, C3HC4 type (RING finger),
           PF01485: IBR domain
          Length = 1775

 Score = 30.7 bits (66), Expect = 0.79
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -3

Query: 291 PPLSHRPRWTQSHHQ 247
           PPL+HRP W Q H Q
Sbjct: 39  PPLNHRPTWNQQHSQ 53


>At3g59580.1 68416.m06648 RWP-RK domain-containing protein similar
           to nodule inception protein [Lotus japonicus]
           GI:6448579; contains Pfam profile: PF02042 RWP-RK domain
          Length = 894

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 306 GLPGRPPLSHRPRWTQSHHQLSAAQHIRVVQVLELAPRAHI 184
           GLPGR  +S  P WT +      A+++R+   L+   R  I
Sbjct: 177 GLPGRVFISGVPEWTSNVMYYKTAEYLRMKHALDNEVRGSI 217


>At2g21840.1 68415.m02595 CHP-rich zinc finger protein, putative
          Length = 746

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +1

Query: 106 YCLNGGVCFTVVISESPIYNCECQSGYVG 192
           YC   GVC T+VIS  P Y+CE +  +VG
Sbjct: 322 YC---GVCETMVISRYPEYSCE-ECDFVG 346


>At1g61080.1 68414.m06877 proline-rich family protein 
          Length = 907

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 17/51 (33%), Positives = 19/51 (37%)
 Frame = -3

Query: 408 PPGPATATNVTCPRPQPQETCRGAAAAPTLRDTQGLPGRPPLSHRPRWTQS 256
           PP P   T +  P P P    R A A P      G    PP    P  TQ+
Sbjct: 511 PPPPPLPTTIAAPPPPPPPP-RAAVAPPPPPPPPGTAAAPPPPPPPPGTQA 560


>At2g45470.1 68415.m05655 fasciclin-like arabinogalactan-protein
           (FLA8)
          Length = 420

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = -3

Query: 417 ETRPPGPATATN-VTCPRPQPQETCRGAAAAPTLRDTQGLPGRPPLSHRPRWTQSHHQLS 241
           +++ P PA A   VT P P P +     AA+P    T   P   P S  P  + +    +
Sbjct: 334 KSKSPSPAPAPEPVTAPTPSPADAPSPTAASPPAPPTDESPESAP-SDSPTGSANSKSAN 392

Query: 240 AA 235
           AA
Sbjct: 393 AA 394


>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
           non-consensus splice site at the intron:exon boundary
           (AT:exon)
          Length = 247

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = -3

Query: 414 TRPPGPATATNVTCPRPQPQETCRGAAAAPTLRDTQGLPGRPPLSHRP 271
           T PP P  A  ++   P PQ      A+APT+      P   P S  P
Sbjct: 80  TSPPAPKVAPVISPATPPPQPPQSPPASAPTVSPPPVSPPPAPTSPPP 127


>At1g66190.1 68414.m07513 expressed protein ; expression supported
           by MPSS
          Length = 270

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 19/44 (43%), Positives = 22/44 (50%)
 Frame = +3

Query: 171 VSKRVCGPAVRVQGPGQLVCVERPTADDETASIAGGATVAVFLA 302
           VSKR     + V GPG  VC       D+ AS AG  TV V +A
Sbjct: 211 VSKRSLWKGMIVMGPGSTVC----GRSDDVASQAGRRTVKVAVA 250


>At4g33350.1 68417.m04741 chloroplast inner membrane import protein
           Tic22, putative similar to Tic22 [Pisum sativum]
           gi|3769671|gb|AAC64606
          Length = 268

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 17/55 (30%), Positives = 22/55 (40%)
 Frame = -2

Query: 379 HLSASAAAGDLSRRCSRTHAPRHTRIARKTATVAPPAMDAVSSSAVGRSTHTSCP 215
           H   +  + DLS R   T     T   R+ +   PP   +VS S  G  T T  P
Sbjct: 18  HHQCTRFSSDLSARIEDTKRFAETLATRRFSLPTPPPFASVSQSKSGTPTTTLSP 72


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,476,790
Number of Sequences: 28952
Number of extensions: 271390
Number of successful extensions: 834
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)