Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0851.Seq
         (703 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    24   1.4  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    24   1.4  
AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A prot...    24   1.4  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    24   1.4  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    23   1.8  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    23   3.2  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    22   4.2  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    22   4.2  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    22   4.2  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    22   4.2  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   4.2  
AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            22   4.2  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    22   4.2  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.6  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   7.4  
EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive pep...    21   9.7  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    21   9.7  

>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 193 AGSHHHHEFPPPARAASTGPSIVQDHQSLA 104
           + +HHHH+    A  A+   S+V    S A
Sbjct: 6   SAAHHHHQAAAAAFGAAASGSMVPSFSSTA 35


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 193 AGSHHHHEFPPPARAASTGPSIVQDHQSLA 104
           + +HHHH+    A  A+   S+V    S A
Sbjct: 65  SAAHHHHQAAAAAFGAAASGSMVPSFSSTA 94


>AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A
           protein.
          Length = 150

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 193 AGSHHHHEFPPPARAASTGPSIVQDHQSLA 104
           + +HHHH+    A  A+   S+V    S A
Sbjct: 6   SAAHHHHQAAAAAFGAAASGSMVPSFSSTA 35


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 193 AGSHHHHEFPPPARAASTGPSIVQDHQSLA 104
           + +HHHH+    A  A+   S+V    S A
Sbjct: 65  SAAHHHHQAAAAAFGAAASGSMVPSFSSTA 94


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -1

Query: 196 PAGSHHHHEFPPPARAASTGPSIVQD 119
           P  + + H F  PA  A TGP+   D
Sbjct: 36  PLRTSYQHHFNSPAGNAHTGPTGTHD 61


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -2

Query: 54  IIEAPSSTKNKEQQRDPE 1
           ++++PSST +  + R PE
Sbjct: 281 VLQSPSSTSSSPEPRSPE 298


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/19 (36%), Positives = 8/19 (42%)
 Frame = -3

Query: 194 CRIAPPS*ISATCSSSINW 138
           C   PP    +TC   I W
Sbjct: 116 CLYVPPGIFKSTCKMDITW 134


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/19 (36%), Positives = 8/19 (42%)
 Frame = -3

Query: 194 CRIAPPS*ISATCSSSINW 138
           C   PP    +TC   I W
Sbjct: 116 CLYVPPGIFKSTCKMDITW 134


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/19 (36%), Positives = 8/19 (42%)
 Frame = -3

Query: 194 CRIAPPS*ISATCSSSINW 138
           C   PP    +TC   I W
Sbjct: 116 CLYVPPGIFKSTCKMDITW 134


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/19 (36%), Positives = 8/19 (42%)
 Frame = -3

Query: 194 CRIAPPS*ISATCSSSINW 138
           C   PP    +TC   I W
Sbjct: 116 CLYVPPGIFKSTCKMDITW 134


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -1

Query: 85  DDPRHFGGCHHH*GTQLYQE 26
           +DP  FGG   H  T L QE
Sbjct: 114 EDPEPFGGVRDHNLTTLCQE 133


>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -3

Query: 260 MEMPCTKSPPCACLPDYPWI 201
           M++P     P   +P+YPW+
Sbjct: 99  MDVPHGMGSPGVNVPEYPWM 118


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -3

Query: 260 MEMPCTKSPPCACLPDYPWI 201
           M++P     P   +P+YPW+
Sbjct: 99  MDVPHGMGSPGVNVPEYPWM 118


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/19 (36%), Positives = 8/19 (42%)
 Frame = -3

Query: 194 CRIAPPS*ISATCSSSINW 138
           C   PP    +TC   I W
Sbjct: 116 CLYVPPGIFKSTCKIDITW 134


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = -1

Query: 103 GRSRRHDDPRHFGGCH 56
           G S  H   R  GGCH
Sbjct: 272 GTSTNHQRGRILGGCH 287


>EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive
           peptide receptor 2 protein.
          Length = 354

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +2

Query: 17  CSLFLVELGASMMVASTKVPWVI 85
           C L + +L   ++  ST + W I
Sbjct: 86  CQLAIADLAVGLISVSTDIAWRI 108


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 3/86 (3%)
 Frame = -2

Query: 309 AAYSLHAALVQPERRCHGNALYEIASMRLFARL-SLDS--ALPDRTTIMNFRHLLEQHQL 139
           A Y+      + +R    N   E      F +L SL S  A P R      R L  +   
Sbjct: 241 ARYNFERLCNKLKRATRFNDFNEAIKEAYFPKLDSLVSSRAWPSRVANQKLRDLNREVDQ 300

Query: 138 ARQLFKTINRWLAEAGVMMTQGTLVD 61
            +Q  + + RW       + QG++ D
Sbjct: 301 IKQDVEDLKRWSDRIYAAIHQGSVTD 326


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,952
Number of Sequences: 336
Number of extensions: 4446
Number of successful extensions: 19
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18530690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)