Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0851.Seq
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    28   1.5  
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    27   2.0  
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|...    27   3.4  
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    27   3.4  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    27   3.4  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   4.5  
SPCC16C4.17 |mug123||meiotically upregulated gene Mug123|Schizos...    26   6.0  

>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 16/68 (23%), Positives = 33/68 (48%)
 Frame = -1

Query: 601 ATVITSGQHVVRFPLGKVRTSS*YEIIIFIRAHPRGTS*AINSPSPIVNSALSAVRPEKR 422
           AT ++S + +  F  G V +SS  ++ +     PR  + +++   P+++  L  + P  R
Sbjct: 163 ATYMSSAEDIKNFKEGPV-SSSIQDVPVMSTEQPRMHTFSLSELVPLLSERLYVINPNTR 221

Query: 421 FSSPAWSR 398
               +W R
Sbjct: 222 MFLVSWIR 229


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 236 PPCACLPDYPWIAPC 192
           P C CLPD+P   PC
Sbjct: 20  PGCNCLPDWPVTLPC 34


>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 712

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = -1

Query: 184 HHHHEFPPPARAASTGPSIVQDHQSLAGRSRRHDDP-RHF 68
           HHHH   P  R +     +  D   LA    RH+ P +HF
Sbjct: 11  HHHHTSVPGERLSDPLDPLSADELKLAVEIIRHEYPSKHF 50


>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 326 YPLETMLRIHCMQHWYNLSDG 264
           YPLE +    C+Q W N++ G
Sbjct: 176 YPLELITASICLQFWININSG 196


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = -3

Query: 338 GRRPYPLETMLRIH-CMQHWYNLS--DGAMEMPCTKSPPCACLPDYPWIAP 195
           G  P+ L    R+H C+  + + +  +G ++   T S   A   D+PWI P
Sbjct: 620 GNSPFRLVVQYRMHPCLSEFPSNTFYEGTLQNGVTTSERIARHVDFPWIQP 670


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/50 (32%), Positives = 20/50 (40%)
 Frame = -1

Query: 280 TT*ATVPWKCPVRNRLHAPVCPIIPG*RPAGSHHHHEFPPPARAASTGPS 131
           +T  T     P       PV P +P   P  +      PPPA  +STG S
Sbjct: 282 STSCTTSTSIPPTGNSTTPVTPTVP---PTSTSSTSTPPPPASTSSTGTS 328



 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/50 (32%), Positives = 20/50 (40%)
 Frame = -1

Query: 280 TT*ATVPWKCPVRNRLHAPVCPIIPG*RPAGSHHHHEFPPPARAASTGPS 131
           +T  T     P       PV P +P   P  +      PPPA  +STG S
Sbjct: 336 STSCTTSTSIPPTGNSTTPVTPTVP---PTSTSSTSTPPPPASTSSTGTS 382


>SPCC16C4.17 |mug123||meiotically upregulated gene
           Mug123|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 235

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 18/44 (40%), Positives = 22/44 (50%)
 Frame = -1

Query: 493 TS*AINSPSPIVNSALSAVRPEKRFSSPAWSRFCHGRI*PLSSS 362
           TS AINS      S  S V+  +R  +  WS    GR+ PL SS
Sbjct: 21  TSNAINSNHESNGSTFSYVQSLRRAKATVWSDI--GRVAPLHSS 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,172,925
Number of Sequences: 5004
Number of extensions: 70475
Number of successful extensions: 194
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)