Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0851.Seq
         (703 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81028-3|CAB02691.1|  545|Caenorhabditis elegans Hypothetical pr...    31   0.80 
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen...    29   4.3  
Z46787-16|CAO78703.1|  821|Caenorhabditis elegans Hypothetical p...    28   5.6  
Z35596-2|CAO78713.1|  821|Caenorhabditis elegans Hypothetical pr...    28   5.6  
AL132952-10|CAB63384.1|  591|Caenorhabditis elegans Hypothetical...    28   7.4  
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for...    28   7.4  
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for...    28   7.4  
AF125445-1|AAD12803.2|  550|Caenorhabditis elegans Hypothetical ...    28   7.4  
AF040648-7|AAK26140.1|  386|Caenorhabditis elegans Lethal protei...    28   7.4  
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei...    28   7.4  
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei...    28   7.4  
U23523-6|AAC46561.1|   86|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AF047659-10|AAC04430.1|  798|Caenorhabditis elegans Hypothetical...    27   9.8  

>Z81028-3|CAB02691.1|  545|Caenorhabditis elegans Hypothetical
           protein B0365.6 protein.
          Length = 545

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = -3

Query: 194 CRIAPPS*ISATCSSSINWPVNCSRPSIAGWPKQ 93
           C  AP S I+ TCS   N   NC  PS++  PKQ
Sbjct: 149 CETAPTSPITDTCSFQYNG--NCYYPSLSALPKQ 180


>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element
           on autosome protein2 protein.
          Length = 1758

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 20/65 (30%), Positives = 28/65 (43%)
 Frame = -1

Query: 196 PAGSHHHHEFPPPARAASTGPSIVQDHQSLAGRSRRHDDPRHFGGCHHH*GTQLYQEQRA 17
           P+ SHHHH     + ++S+  S +QD QS    S  H         H H   Q Y +   
Sbjct: 15  PSSSHHHHPGQQQS-SSSSSSSHLQDFQSPPSAS--HPYYHQQQPQHQHQQAQQYGQATG 71

Query: 16  ATRSG 2
           +T  G
Sbjct: 72  STNGG 76


>Z46787-16|CAO78703.1|  821|Caenorhabditis elegans Hypothetical
           protein C30D11.1b protein.
          Length = 821

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -2

Query: 294 HAALVQPERRCHGNALYEIASMRLFARLSLDS-ALPD 187
           H++L QP  RCH    + I S    A LSL +  LP+
Sbjct: 54  HSSLSQPALRCHSKQHHNILSPHALAVLSLGADVLPE 90


>Z35596-2|CAO78713.1|  821|Caenorhabditis elegans Hypothetical
           protein C30D11.1b protein.
          Length = 821

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -2

Query: 294 HAALVQPERRCHGNALYEIASMRLFARLSLDS-ALPD 187
           H++L QP  RCH    + I S    A LSL +  LP+
Sbjct: 54  HSSLSQPALRCHSKQHHNILSPHALAVLSLGADVLPE 90


>AL132952-10|CAB63384.1|  591|Caenorhabditis elegans Hypothetical
           protein Y51H4A.13 protein.
          Length = 591

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/67 (26%), Positives = 23/67 (34%), Gaps = 2/67 (2%)
 Frame = -1

Query: 250 PVRNRLHAPVCPIIPG*RPAGSHHHHEFPPPARAASTGPS--IVQDHQSLAGRSRRHDDP 77
           P+ N  H   C +         H   + PP        P+  I   HQ      RR+  P
Sbjct: 263 PLENPFHRQTCTVPSNTNIHNDHCSGQAPPDPYQPHGHPAHHIPNPHQLHHQHRRRYSSP 322

Query: 76  RHFGGCH 56
           R F G H
Sbjct: 323 RRFHGNH 329


>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
            protein.
          Length = 4280

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -1

Query: 184  HHHHEFPPPARAASTGPSIVQDHQSLAGRSRRHDDPRHF 68
            H +++ P  A  +STG  + Q+ + +   SRR    RH+
Sbjct: 4152 HVYNQQPEGATMSSTGAQLAQELEEIGSTSRRSTLRRHY 4190


>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
            protein.
          Length = 4450

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -1

Query: 184  HHHHEFPPPARAASTGPSIVQDHQSLAGRSRRHDDPRHF 68
            H +++ P  A  +STG  + Q+ + +   SRR    RH+
Sbjct: 4149 HVYNQQPEGATMSSTGAQLAQELEEIGSTSRRSTLRRHY 4187


>AF125445-1|AAD12803.2|  550|Caenorhabditis elegans Hypothetical
           protein Y24D9B.1 protein.
          Length = 550

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/67 (26%), Positives = 23/67 (34%), Gaps = 2/67 (2%)
 Frame = -1

Query: 250 PVRNRLHAPVCPIIPG*RPAGSHHHHEFPPPARAASTGPS--IVQDHQSLAGRSRRHDDP 77
           P+ N  H   C +         H   + PP        P+  I   HQ      RR+  P
Sbjct: 263 PLENPFHRQTCTVPSNTNIHNDHGPGQAPPDPYQPHGHPAHHIPNPHQLHHQHRRRYSSP 322

Query: 76  RHFGGCH 56
           R F G H
Sbjct: 323 RRFHGNH 329


>AF040648-7|AAK26140.1|  386|Caenorhabditis elegans Lethal protein
           805, isoform c protein.
          Length = 386

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -1

Query: 184 HHHHEFPPPARAASTGPSIVQDHQSLAGRSRRHDDPRHF 68
           H +++ P  A  +STG  + Q+ + +   SRR    RH+
Sbjct: 258 HVYNQQPEGATMSSTGAQLAQELEEIGSTSRRSTLRRHY 296


>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
            805, isoform b protein.
          Length = 4450

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -1

Query: 184  HHHHEFPPPARAASTGPSIVQDHQSLAGRSRRHDDPRHF 68
            H +++ P  A  +STG  + Q+ + +   SRR    RH+
Sbjct: 4149 HVYNQQPEGATMSSTGAQLAQELEEIGSTSRRSTLRRHY 4187


>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
            805, isoform a protein.
          Length = 4280

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -1

Query: 184  HHHHEFPPPARAASTGPSIVQDHQSLAGRSRRHDDPRHF 68
            H +++ P  A  +STG  + Q+ + +   SRR    RH+
Sbjct: 4152 HVYNQQPEGATMSSTGAQLAQELEEIGSTSRRSTLRRHY 4190


>U23523-6|AAC46561.1|   86|Caenorhabditis elegans Hypothetical
           protein F53A9.6 protein.
          Length = 86

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/51 (33%), Positives = 18/51 (35%)
 Frame = -1

Query: 196 PAGSHHHHEFPPPARAASTGPSIVQDHQSLAGRSRRHDDPRHFGGCHHH*G 44
           P G H  +  PP   A    P  V  H    G    H D  H    HHH G
Sbjct: 12  PYGGHGGYAPPPVHGAPGYMPPTVHVHTD--GGHHGHMDTHHHHDSHHHGG 60


>AF047659-10|AAC04430.1|  798|Caenorhabditis elegans Hypothetical
           protein K07H8.10 protein.
          Length = 798

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 602 GDRHHFRSARRAFSPWEGANK 540
           GDR +FR   R  SPW G ++
Sbjct: 107 GDRGNFRGGDRGGSPWRGGDR 127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,380,081
Number of Sequences: 27780
Number of extensions: 442588
Number of successful extensions: 1392
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1389
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)