Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0851.Seq
(703 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY703685-1|AAU12681.1| 200|Apis mellifera abdominal-A protein. 22 4.9
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 22 4.9
AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein. 22 4.9
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.5
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.5
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 6.5
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 6.5
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 22 6.5
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.6
DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein. 21 8.6
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 21 8.6
AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9 methylt... 21 8.6
>AY703685-1|AAU12681.1| 200|Apis mellifera abdominal-A protein.
Length = 200
Score = 22.2 bits (45), Expect = 4.9
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = -1
Query: 193 AGSHHHHEFPPPARAASTG 137
A +HHHH+ AA+ G
Sbjct: 95 AAAHHHHQQQQAVAAAAFG 113
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 22.2 bits (45), Expect = 4.9
Identities = 11/47 (23%), Positives = 19/47 (40%)
Frame = -3
Query: 563 SPWEGANKFLI*DHHIHPGASQRDIMSHQLTFADSEFSTKRRQTRKE 423
+PW +F++ H I G + DI S+ + + KE
Sbjct: 396 NPWTKKLEFVVGQHRILKGPANPDIFRVSCATEHSQLTNISEEVLKE 442
>AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein.
Length = 238
Score = 22.2 bits (45), Expect = 4.9
Identities = 11/47 (23%), Positives = 19/47 (40%)
Frame = -3
Query: 563 SPWEGANKFLI*DHHIHPGASQRDIMSHQLTFADSEFSTKRRQTRKE 423
+PW +F++ H I G + DI S+ + + KE
Sbjct: 102 NPWTKKLEFVVGQHRILKGPANPDIFRVSCATEHSQLTNISEEVLKE 148
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.5
Identities = 7/19 (36%), Positives = 8/19 (42%)
Frame = -3
Query: 194 CRIAPPS*ISATCSSSINW 138
C PP +TC I W
Sbjct: 99 CLYVPPGIFKSTCKIDITW 117
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.5
Identities = 7/19 (36%), Positives = 8/19 (42%)
Frame = -3
Query: 194 CRIAPPS*ISATCSSSINW 138
C PP +TC I W
Sbjct: 99 CLYVPPGIFKSTCKIDITW 117
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 6.5
Identities = 7/19 (36%), Positives = 8/19 (42%)
Frame = -3
Query: 194 CRIAPPS*ISATCSSSINW 138
C PP +TC I W
Sbjct: 167 CLYVPPGIFKSTCKIDITW 185
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 6.5
Identities = 7/19 (36%), Positives = 8/19 (42%)
Frame = -3
Query: 194 CRIAPPS*ISATCSSSINW 138
C PP +TC I W
Sbjct: 167 CLYVPPGIFKSTCKIDITW 185
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 21.8 bits (44), Expect = 6.5
Identities = 7/19 (36%), Positives = 8/19 (42%)
Frame = -3
Query: 194 CRIAPPS*ISATCSSSINW 138
C PP +TC I W
Sbjct: 136 CLYVPPGIFKSTCKIDITW 154
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.6
Identities = 7/19 (36%), Positives = 8/19 (42%)
Frame = -3
Query: 194 CRIAPPS*ISATCSSSINW 138
C PP +TC I W
Sbjct: 99 CLYVPPGIFKSTCKMDIAW 117
>DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein.
Length = 828
Score = 21.4 bits (43), Expect = 8.6
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -1
Query: 262 PWKCPVRNRLHAPVCPII 209
PW +RNRL + PII
Sbjct: 545 PWLPLLRNRLDTLIYPII 562
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 21.4 bits (43), Expect = 8.6
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -3
Query: 605 CGDRHHFRSARRAFSPWE 552
C D HHF S+ A S W+
Sbjct: 73 CSDVHHFESSFNAQS-WQ 89
>AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9
methyltransferase protein.
Length = 683
Score = 21.4 bits (43), Expect = 8.6
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = +3
Query: 453 EFTIGEGELMAHDVPLGC 506
E+ G G ++ D P+GC
Sbjct: 418 EYLPGNGVIIPDDPPIGC 435
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,603
Number of Sequences: 438
Number of extensions: 5610
Number of successful extensions: 34
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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