Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0851.Seq
(703 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g66840.1 68414.m07597 expressed protein contains Pfam profile... 32 0.42
At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family... 31 0.74
At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to ... 30 1.3
At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to ... 30 1.3
At3g47060.1 68416.m05110 FtsH protease, putative contains simila... 30 1.3
At1g30720.1 68414.m03755 FAD-binding domain-containing protein s... 29 2.3
At5g59990.1 68418.m07523 expressed protein ; expression supporte... 29 3.0
At2g43970.2 68415.m05468 La domain-containing protein contains P... 29 3.9
At2g43970.1 68415.m05467 La domain-containing protein contains P... 29 3.9
At1g30730.1 68414.m03756 FAD-binding domain-containing protein s... 29 3.9
At4g25980.1 68417.m03739 cationic peroxidase, putative similar t... 28 5.2
At4g00150.1 68417.m00015 scarecrow-like transcription factor 6 (... 28 5.2
At3g24600.1 68416.m03090 hypothetical protein 28 5.2
At1g22420.1 68414.m02803 hydroxyproline-rich glycoprotein family... 28 5.2
At5g58870.1 68418.m07376 FtsH protease, putative contains simila... 28 6.9
At2g28290.2 68415.m03434 chromatin remodeling protein, putative ... 28 6.9
At2g28290.1 68415.m03433 chromatin remodeling protein, putative ... 28 6.9
At1g47210.2 68414.m05226 cyclin family protein similar to A-type... 28 6.9
At1g47210.1 68414.m05225 cyclin family protein similar to A-type... 28 6.9
At1g29940.1 68414.m03658 DNA-directed RNA polymerase family prot... 28 6.9
At5g45240.1 68418.m05552 disease resistance protein (TIR-NBS-LRR... 27 9.1
At5g33210.1 68418.m03923 zinc finger protein-related similar to ... 27 9.1
At4g36260.1 68417.m05157 zinc finger protein-related similar to ... 27 9.1
At4g13130.1 68417.m02045 DC1 domain-containing protein contains ... 27 9.1
At3g51060.1 68416.m05591 zinc finger protein, putative / lateral... 27 9.1
At1g75520.1 68414.m08776 lateral root primordium (LRP) protein-r... 27 9.1
>At1g66840.1 68414.m07597 expressed protein contains Pfam profile
PF05701: Plant protein of unknown function (DUF827);
expression supported by MPSS
Length = 607
Score = 31.9 bits (69), Expect = 0.42
Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 6/100 (6%)
Frame = -2
Query: 282 VQPERRCHGNALY-----EIASMRL-FARLSLDSALPDRTTIMNFRHLLEQHQLARQLFK 121
V E R GN Y E+ M+ ++L LD R ++ + ++E + K
Sbjct: 95 VMNESRIDGNGGYVRIMRELEDMKQELSKLKLDVVYVSREKVVAEKEVMELESRMEENLK 154
Query: 120 TINRWLAEAGVMMTQGTLVDATIIEAPSSTKNKEQQRDPE 1
+ E V + LV+ IEA K E+QR+ E
Sbjct: 155 LLESLKLEVDVANEEHVLVEVAKIEALKECKEVEEQREKE 194
>At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; related to hydroxyproline-rich
glycoprotein [Phaseolus vulgaris] gi|169349|gb|AAA33765
Length = 219
Score = 31.1 bits (67), Expect = 0.74
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -1
Query: 184 HHHHEFPPPARAASTGPSIVQDHQSL 107
HHHH PPP A +T + DH L
Sbjct: 175 HHHHRPPPPPPATTTPITNTSDHHQL 200
>At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to
nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
cDNA provides a truncated ORF likely due to a skipped
exon. An alternative ORF is provided.
Length = 383
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = -1
Query: 268 TVPWKCPVRNRLHAPVCPIIPG*RPAGSHHHHEFPPPARAASTGP 134
T P CP+ H P CP P P+ ++ FPPP S P
Sbjct: 25 TQPNICPICTVPHFPFCPPYP--PPSSFAYNPNFPPPPHLNSPRP 67
>At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to
nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
cDNA provides a truncated ORF likely due to a skipped
exon. An alternative ORF is provided.
Length = 661
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = -1
Query: 268 TVPWKCPVRNRLHAPVCPIIPG*RPAGSHHHHEFPPPARAASTGP 134
T P CP+ H P CP P P+ ++ FPPP S P
Sbjct: 25 TQPNICPICTVPHFPFCPPYP--PPSSFAYNPNFPPPPHLNSPRP 67
>At3g47060.1 68416.m05110 FtsH protease, putative contains
similarity to FtsH protease GI:13183728 from [Medicago
sativa]
Length = 802
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +3
Query: 237 RFRTGHFHGTVAQVVPMLHAVNTQHGL-QRIGPSAIARLGIKRLDDSGHILPW 392
R TG F + + M + ++GL Q+IGP ++A L +DDSG PW
Sbjct: 665 RISTGAFDD-IRRATDMAYKAVAEYGLNQKIGPVSVATLSGGGIDDSGG-SPW 715
>At1g30720.1 68414.m03755 FAD-binding domain-containing protein
similar to SP|P30986 reticuline oxidase precursor
(Berberine-bridge-forming enzyme) (BBE)
(Tetrahydroprotoberberine synthase) [Eschscholzia
californica]; contains PF01565 FAD binding domain
Length = 527
Score = 29.5 bits (63), Expect = 2.3
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Frame = +3
Query: 381 ILPWQNLLHAGEENLFSGLTALSAEFT-IGEGELMAHDVPLGCARMNMMISYQELVRTFP 557
I+ WQ+ H+ + NLF LT T GE ++A + + R + +++ R FP
Sbjct: 269 IMKWQSFAHSTDRNLFVRLTLTLVNGTKPGENTVLATFIGMYLGRSDKLLTVMN--RDFP 326
Query: 558 --RGKRTTC 578
+ K+T C
Sbjct: 327 ELKLKKTDC 335
>At5g59990.1 68418.m07523 expressed protein ; expression supported
by MPSS
Length = 241
Score = 29.1 bits (62), Expect = 3.0
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -1
Query: 184 HHHHEFPPPARA 149
HHHH+FPPP A
Sbjct: 33 HHHHQFPPPPLA 44
>At2g43970.2 68415.m05468 La domain-containing protein contains Pfam
profile PF05383: La domain
Length = 529
Score = 28.7 bits (61), Expect = 3.9
Identities = 21/62 (33%), Positives = 23/62 (37%)
Frame = -1
Query: 235 LHAPVCPIIPG*RPAGSHHHHEFPPPARAASTGPSIVQDHQSLAGRSRRHDDPRHFGGCH 56
L P IIP P G H + PP GP +Q H L H P H H
Sbjct: 65 LPQPPRMIIPPPPPHGMLHMYHHQPPFNTPVLGPVPIQPH--LVPVQNHH--PHHRFHQH 120
Query: 55 HH 50
HH
Sbjct: 121 HH 122
>At2g43970.1 68415.m05467 La domain-containing protein contains Pfam
profile PF05383: La domain
Length = 545
Score = 28.7 bits (61), Expect = 3.9
Identities = 21/62 (33%), Positives = 23/62 (37%)
Frame = -1
Query: 235 LHAPVCPIIPG*RPAGSHHHHEFPPPARAASTGPSIVQDHQSLAGRSRRHDDPRHFGGCH 56
L P IIP P G H + PP GP +Q H L H P H H
Sbjct: 65 LPQPPRMIIPPPPPHGMLHMYHHQPPFNTPVLGPVPIQPH--LVPVQNHH--PHHRFHQH 120
Query: 55 HH 50
HH
Sbjct: 121 HH 122
>At1g30730.1 68414.m03756 FAD-binding domain-containing protein
similar to SP|P30986 reticuline oxidase precursor
(Berberine-bridge-forming enzyme) (BBE)
(Tetrahydroprotoberberine synthase) [Eschscholzia
californica]; contains PF01565 FAD binding domain
Length = 526
Score = 28.7 bits (61), Expect = 3.9
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Frame = +3
Query: 381 ILPWQNLLHAGEENLFSGLT-ALSAEFTIGEGELMAHDVPLGCARMNMMISYQELVRTFP 557
I+ WQN H+ + NLF LT L GE +++A + + + ++ R FP
Sbjct: 268 IMKWQNFSHSTDRNLFVKLTLTLVNGAKPGEKKVLATFIGMNLGGFDKTLNVMN--RDFP 325
Query: 558 --RGKRTTC*PEVMTVATATRLWRGEP 632
+ K+T C M + W G P
Sbjct: 326 ELKLKKTDC--TEMRWIDSVLFWAGYP 350
>At4g25980.1 68417.m03739 cationic peroxidase, putative similar to
cationic peroxidase [Arachis hypogaea]
gi|166475|gb|AAA32676
Length = 371
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +2
Query: 491 CPSGMRPDEYDDLISGTCSHLPKGKTHDVLTGSDDGRHSNTSLA 622
CP + + L + L G ++V TG DGR SN SLA
Sbjct: 157 CPGVVSCSDIVALAARDAISLANGPAYEVPTGRRDGRVSNMSLA 200
>At4g00150.1 68417.m00015 scarecrow-like transcription factor 6
(SCL6)
Length = 558
Score = 28.3 bits (60), Expect = 5.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 181 HHHEFPPPARAASTGP 134
HHH PPPA+ + GP
Sbjct: 187 HHHHTPPPAKRLNPGP 202
>At3g24600.1 68416.m03090 hypothetical protein
Length = 506
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 614 SLAWGARYPIRPIVSRITIHWPSFY 688
S+ WGA +P PIVS ++ SFY
Sbjct: 333 SVLWGASHPFSPIVSVKSVDIHSFY 357
>At1g22420.1 68414.m02803 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 480
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = -1
Query: 484 AINSPSPIVNSALSAVRPEKRFSSPAWSRFCHGRI*PLSSSRFIPRRAMADGPIRW 317
+++ P+P+ N V P+ +SP WS C P+ S +P A P+ W
Sbjct: 282 SVDLPNPLNNIRPENVPPQVSAASPLWSLDC-----PIQSENVLP-LVSATSPLDW 331
>At5g58870.1 68418.m07376 FtsH protease, putative contains
similarity to cell division protein FtsH homolog 3
SP:P73437 (EC 3.4.24.-) [strain PCC6803] {Synechocystis
sp.}
Length = 806
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 267 VAQVVPMLHAVNTQHGL-QRIGPSAIARLGIKRLDDSGHILPW 392
+ + M + ++GL ++IGP ++A L +DDSG PW
Sbjct: 678 IRRATDMAYKAVAEYGLNEKIGPVSVATLSAGGIDDSGG-SPW 719
>At2g28290.2 68415.m03434 chromatin remodeling protein, putative (SYD)
similar to transcriptional activator HBRM [Homo sapiens]
GI:414117; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain; identical to cDNA putative chromatin
remodeling protein SYD (SPLAYED) GI:13603720
Length = 3529
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/53 (30%), Positives = 30/53 (56%)
Frame = -3
Query: 527 DHHIHPGASQRDIMSHQLTFADSEFSTKRRQTRKEIFLSRMEQILPWQNMTAV 369
D H+H GAS+ +I++ ++FS+ +T +E S++ P ++TAV
Sbjct: 3002 DMHVHLGASKSEIVAE-----GTDFSSSLPKTEEENAKSQLADTEPSSSLTAV 3049
>At2g28290.1 68415.m03433 chromatin remodeling protein, putative (SYD)
similar to transcriptional activator HBRM [Homo sapiens]
GI:414117; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain; identical to cDNA putative chromatin
remodeling protein SYD (SPLAYED) GI:13603720
Length = 3574
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/53 (30%), Positives = 30/53 (56%)
Frame = -3
Query: 527 DHHIHPGASQRDIMSHQLTFADSEFSTKRRQTRKEIFLSRMEQILPWQNMTAV 369
D H+H GAS+ +I++ ++FS+ +T +E S++ P ++TAV
Sbjct: 3002 DMHVHLGASKSEIVAE-----GTDFSSSLPKTEEENAKSQLADTEPSSSLTAV 3049
>At1g47210.2 68414.m05226 cyclin family protein similar to A-type
cyclin [Catharanthus roseus] GI:2190259; contains Pfam
profile PF00134: Cyclin, N-terminal domain
Length = 372
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 166 PPPARAASTGPSIVQDHQSLAGRSRRHDDPRHFG 65
PPPA+ + P + D +S + R DDP+ G
Sbjct: 67 PPPAKQIKSAPVAIIDLESKSDIDSRSDDPQMCG 100
>At1g47210.1 68414.m05225 cyclin family protein similar to A-type
cyclin [Catharanthus roseus] GI:2190259; contains Pfam
profile PF00134: Cyclin, N-terminal domain
Length = 192
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 166 PPPARAASTGPSIVQDHQSLAGRSRRHDDPRHFG 65
PPPA+ + P + D +S + R DDP+ G
Sbjct: 67 PPPAKQIKSAPVAIIDLESKSDIDSRSDDPQMCG 100
>At1g29940.1 68414.m03658 DNA-directed RNA polymerase family protein
similar to SP|P22138 DNA-directed RNA polymerase I 135
kDa polypeptide (EC 2.7.7.6) (RNA polymerase I subunit 2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF04563; RNA polymerase beta subunit, PF04560: RNA
polymerase Rpb2 domain 7, PF04561: RNA polymerase Rpb2
domain 2, PF04565: RNA polymerase Rpb2 domain 3, PF00562:
RNA polymerase Rpb2 domain 6
Length = 1114
Score = 27.9 bits (59), Expect = 6.9
Identities = 20/75 (26%), Positives = 29/75 (38%)
Frame = +3
Query: 249 GHFHGTVAQVVPMLHAVNTQHGLQRIGPSAIARLGIKRLDDSGHILPWQNLLHAGEENLF 428
G HG P AV +G + S + +DD G +L + H G E L+
Sbjct: 891 GSLHGKFVDATPFRDAVKKTNGEEESKSSLL-------VDDLGSMLKEKGFNHYGTETLY 943
Query: 429 SGLTALSAEFTIGEG 473
SG + + I G
Sbjct: 944 SGYLGVELKCEIFMG 958
>At5g45240.1 68418.m05552 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 812
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/43 (25%), Positives = 24/43 (55%)
Frame = +3
Query: 273 QVVPMLHAVNTQHGLQRIGPSAIARLGIKRLDDSGHILPWQNL 401
+VVP+ + V+ Q+ GP + A ++R + + H+ W+ +
Sbjct: 74 EVVPVFYGVSRSDVRQQSGPFSDAFTKLERSNPADHVTKWRRM 116
>At5g33210.1 68418.m03923 zinc finger protein-related similar to
lateral root primordium 1 (LRP1) [Arabidopsis thaliana]
GI:882341; contains Pfam profile PF05142: Domain of
unknown function (DUF702), TIGR01623: putative zinc
finger domain, LRP1 type
Length = 173
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -1
Query: 685 KRRPVNCNTTHYRANWVPGSP-RQRRVAVATV 593
K R C+T H R+ WVP + R+R+ +ATV
Sbjct: 73 KSRGFECST-HVRSTWVPATKRRERQQQLATV 103
>At4g36260.1 68417.m05157 zinc finger protein-related similar to
lateral root primordium 1 (LRP1) [Arabidopsis thaliana]
GI:882341; contains Pfam profile PF05142: Domain of
unknown function (DUF702), TIGR01624: LRP1 C-terminal
domain, TIGR01623: putative zinc finger domain, LRP1
type
Length = 322
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -1
Query: 685 KRRPVNCNTTHYRANWVPGSPRQRRVAVATVITSG 581
K R +C+T H R+ W+P + R+ R + TSG
Sbjct: 115 KSRGFDCST-HVRSTWIPVARRRERQQQLHMSTSG 148
>At4g13130.1 68417.m02045 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 767
Score = 27.5 bits (58), Expect = 9.1
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Frame = -3
Query: 317 ETMLRIHC-----MQHWYNLS--DGAMEMPCTKSPPCACLPDYP-WIAPCRIAPPS*ISA 162
ETM+ +C M ++Y S D AM + C + PP D+P W I PS S
Sbjct: 273 ETMIECYCCDEYLMDYYYYCSSCDFAMNVSCLEKPPPVLSIDHPKWHQHPLILFPSQASF 332
Query: 161 TCS 153
C+
Sbjct: 333 PCN 335
>At3g51060.1 68416.m05591 zinc finger protein, putative / lateral
root primordium (LRP) protein-related similar to lateral
root primordium 1 (LRP1) [Arabidopsis thaliana]
GI:882341; contains Pfam profile PF05142: Domain of
unknown function (DUF702)
Length = 252
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -1
Query: 685 KRRPVNCNTTHYRANWVPGSP-RQRRVAVATV 593
K R C+T H R+ WVP + R+R+ +ATV
Sbjct: 165 KSRGFECST-HVRSTWVPAAKRRERQQQLATV 195
>At1g75520.1 68414.m08776 lateral root primordium (LRP)
protein-related similar to lateral root primordium 1
(LRP1) [Arabidopsis thaliana] GI:882341; contains Pfam
profile PF05142: Domain of unknown function (DUF702)
Length = 346
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 685 KRRPVNCNTTHYRANWVPGSPRQRRVA 605
K R +C T H ++ WVP + R+ R+A
Sbjct: 146 KSRGFHCQT-HVKSTWVPAAKRRERLA 171
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,706,018
Number of Sequences: 28952
Number of extensions: 423532
Number of successful extensions: 1258
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1251
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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