Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0847X.Seq
         (499 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   3.5  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   3.5  
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    21   6.2  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    21   6.2  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   8.1  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   8.1  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   8.1  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 407 SNIPHHEALKRIFPSEEVELKPH 475
           SN+ H+E L++     E E K H
Sbjct: 323 SNLNHNEQLRKYLCKNEDETKNH 345


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 407 SNIPHHEALKRIFPSEEVELKPH 475
           SN+ H+E L++     E E K H
Sbjct: 215 SNLNHNEQLRKYLCKNEDETKNH 237


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
 Frame = -1

Query: 385 ERCEYPSRVGSGSVNFLDGMCATPHITSL--IICGEFNC 275
           E C+Y   V  G    L+   ++PH   L  I   E  C
Sbjct: 70  ENCDYIHNVDCGDRTQLEPPISSPHCERLYGIFADESKC 108


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
 Frame = -1

Query: 385 ERCEYPSRVGSGSVNFLDGMCATPHITSL--IICGEFNC 275
           E C+Y   V  G    L+   ++PH   L  I   E  C
Sbjct: 70  ENCDYIHNVDCGDRTQLEPPISSPHCERLYGIFADESKC 108


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 124 IDEHVDDVVAALLECLAEYTI 186
           IDEH+  VVA +++ L + TI
Sbjct: 159 IDEHLYPVVALVVKNLIKPTI 179


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -2

Query: 399 GSLYMRDVNIR 367
           GS++ RDVN+R
Sbjct: 108 GSVHSRDVNVR 118


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -1

Query: 379 CEYPSRVGSGSVNFLDG 329
           C   SRVG GSV  + G
Sbjct: 144 CTPDSRVGYGSVGLVGG 160


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,109
Number of Sequences: 336
Number of extensions: 2305
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11735024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)