Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0847X.Seq
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    36   0.003
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch...    30   0.17 
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    26   2.7  
SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces pomb...    26   3.6  
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s...    26   3.6  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    25   4.8  
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    25   6.3  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    25   8.4  
SPCC825.03c |psy1|sso1|SNARE Psy1|Schizosaccharomyces pombe|chr ...    25   8.4  

>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 36.3 bits (80), Expect = 0.003
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = +1

Query: 130 EHVDDVVAALLECLAEYTIDMMGDIGAWVREASMSGLLAI 249
           E +++ V  LL+  + Y  D  GD+G+W+R+ +M  + ++
Sbjct: 766 ESIEEFVKELLQVCSNYLTDTRGDVGSWIRKPAMKAISSL 805


>SPAC31G5.10 |eta2||Myb family transcriptional regulator
           Eta2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 30.3 bits (65), Expect = 0.17
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +1

Query: 34  TEATQKWAEARRDAVIGLTEVCQXQGVRGGIDEHVDDVVAALLECLAEY 180
           TE  +KW +AR D ++ +  + + Q +    DEH    +   LE +A +
Sbjct: 164 TEEHEKWFQARIDELLTIRSISREQMIEILEDEHAGSRLQGFLESVASF 212


>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 334 REN*PNQSPRGTDIHISHIQRSSDLEHS 417
           R+  P++SPR   +  S ++ S D+ HS
Sbjct: 87  RDGLPSKSPRRPSVSASTVRNSDDVNHS 114


>SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 339

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = +2

Query: 338 KIDRTRAHAGRIFTSLIYNDPPISNIPHHEALKRIFPSEEVELKPHPKDID 490
           KID    H     T L   +  IS       +++  P + + +KP P D+D
Sbjct: 273 KIDYATPHIKESNTPLFTYNFNISGFDGDSCIEKFTPLDALGIKPSPIDVD 323


>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
           subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 7   RSLIECTKVTEATQKWAE 60
           RSL+ECT   E T  WA+
Sbjct: 327 RSLVECTDAIEQTITWAK 344


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
            Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +1

Query: 349  NQSPRGTDIHISHIQRSSDLEHSASRSIE 435
            +++P  + IH+ HI+R  +L H+ S S+E
Sbjct: 926  DRTPDSSSIHLPHIER-LNLFHTKSESLE 953


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +2

Query: 371 IFTSLIYNDPPISNIPHHEALKRIFPSEE 457
           IF S++Y++  + N  H+E    I+   E
Sbjct: 11  IFFSIVYSEKTLLNFKHYELCNGIYSKSE 39


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +3

Query: 330 PSRKLTEPEPTRDGYSHLSYTTILRSRTFRITKH 431
           PS KL E EP     ++LSY     S   R   H
Sbjct: 18  PSGKLGETEPNGSPLAYLSYYAASNSSKLRKVAH 51


>SPCC825.03c |psy1|sso1|SNARE Psy1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 284

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -3

Query: 329 HVRDATHHVSDNLWRVQL 276
           H+RDA   + DN+ R+++
Sbjct: 27  HIRDAIRQIEDNVGRIEM 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,920,337
Number of Sequences: 5004
Number of extensions: 38303
Number of successful extensions: 124
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)