Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0847X.Seq
(499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0585 - 18998013-18998306,18998448-18998630,18999048-189990... 44 9e-05
05_05_0082 + 22252993-22255617 29 2.1
02_02_0515 - 11110173-11110199,11110497-11110628,11110790-111108... 29 2.1
01_06_0646 - 30832201-30832838,30833643-30833838,30833975-308341... 28 3.6
05_04_0307 + 20066169-20066410,20066803-20066858,20067490-200675... 27 6.3
09_04_0042 - 14055885-14056142,14057508-14057774,14057859-140592... 27 8.4
05_06_0132 + 25893241-25893435,25894266-25894487,25894567-258948... 27 8.4
02_05_0702 - 31027908-31027958,31028062-31029311,31029665-310298... 27 8.4
>10_08_0585 -
18998013-18998306,18998448-18998630,18999048-18999089,
18999226-18999495,18999903-19000454,19000546-19000770,
19001435-19001640,19001738-19001936,19002166-19002381,
19002887-19002991,19003127-19003243,19003366-19003548,
19004292-19004468,19004714-19004816,19005066-19005523
Length = 1109
Score = 43.6 bits (98), Expect = 9e-05
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 9/82 (10%)
Frame = +1
Query: 22 CTKVTEATQKWAEARRDAVIGLTEVCQ--------XQGVRGGIDEHV-DDVVAALLECLA 174
CT + AEAR ++V GL VC+ + ++ D V+ AL L
Sbjct: 660 CTIEDKPDDPDAEARVNSVRGLILVCETLTASVEHSSSFGDSMYSYIKDKVMQALFRALD 719
Query: 175 EYTIDMMGDIGAWVREASMSGL 240
+Y +D GD+G+WVREA+M L
Sbjct: 720 DYAVDNRGDVGSWVREAAMDAL 741
Score = 33.1 bits (72), Expect = 0.13
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = +2
Query: 329 AVEKIDRTRAHAGRIFTSLIYNDPP-ISNIPHHEALKRIFPS 451
AVEKID+ R A + ++YN+ + +IP+ E L++I P+
Sbjct: 799 AVEKIDKIREIAVKTLKRILYNEELFVPSIPYRELLEQIIPN 840
>05_05_0082 + 22252993-22255617
Length = 874
Score = 29.1 bits (62), Expect = 2.1
Identities = 25/78 (32%), Positives = 35/78 (44%)
Frame = +1
Query: 64 RRDAVIGLTEVCQXQGVRGGIDEHVDDVVAALLECLAEYTIDMMGDIGAWVREASMSGLL 243
RRDA +G V RG + LE L ++++ G G V A++S +L
Sbjct: 60 RRDAAVGANRVLFDYARRGMV-----------LEVLDQFSVARRG--GVLVDSATLSCVL 106
Query: 244 AICRSVPKKPRS*TLHKL 297
CRSVP + LH L
Sbjct: 107 KACRSVPDRVLGEQLHCL 124
>02_02_0515 -
11110173-11110199,11110497-11110628,11110790-11110891,
11110970-11111150,11112149-11112276
Length = 189
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +1
Query: 139 DDVVAALLECLAEYTIDMMGDIGAWVREASMSGLLAI 249
DDV+ A ++CL + + GD A++ +A +GLL I
Sbjct: 102 DDVMDAYIQCLRDKEKGIRGDRKAFLEQAIKTGLLNI 138
>01_06_0646 -
30832201-30832838,30833643-30833838,30833975-30834126,
30834258-30834303,30834992-30835216,30835374-30835414,
30835705-30835834,30835951-30836019,30836254-30836307,
30836389-30836547,30836854-30836991,30837079-30837141,
30837225-30837264,30837369-30837415,30838062-30838373
Length = 769
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Frame = +3
Query: 204 RRLGPGSQYVRSTRDMSQCAEEA----PQLNSPQIIRDVMCGVAHM 329
RR GP + + D+ C P LN+ +IR+++CG++HM
Sbjct: 147 RRAGPRQRVYFESEDVKACIVTCGGLCPGLNT--VIRELVCGLSHM 190
>05_04_0307 +
20066169-20066410,20066803-20066858,20067490-20067581,
20068400-20068502,20068623-20068760,20068898-20069148
Length = 293
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 383 LIYNDPPISNIPHHEALKRIFPSEEVELKPHPKDIDDEK 499
++Y P HE +F +VEL P+P+++ D K
Sbjct: 196 MLYKAPSDGKWGEHELDYLLFMVRDVELSPNPEEVADVK 234
>09_04_0042 - 14055885-14056142,14057508-14057774,14057859-14059292,
14059378-14059539,14059642-14059768,14059869-14060200,
14060289-14061083,14061379-14061714,14061791-14062730,
14063338-14063588
Length = 1633
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = +1
Query: 121 GIDEHVDDVVAALLECLAEYTIDMMGDIGAWVREASMSG 237
G+DE +++V +++ L +YT D + WV+ + + G
Sbjct: 1560 GVDERKNELVIGIIDFLRQYTWDK--QLETWVKASGILG 1596
>05_06_0132 +
25893241-25893435,25894266-25894487,25894567-25894863,
25894944-25895111,25895201-25895368,25895456-25895536,
25895704-25895770,25895874-25895971,25896587-25896659,
25896753-25896823,25896919-25896968,25897698-25897810,
25898182-25898300,25898629-25898721,25899025-25899051,
25899422-25899823,25900467-25900513,25900612-25900651,
25900733-25900795,25900881-25901018,25901873-25902031,
25902111-25902164,25902324-25902392,25902514-25902643,
25902909-25902949,25903133-25903178,25903200-25903357,
25903560-25903605,25903702-25903853,25904022-25904243
Length = 1202
Score = 27.1 bits (57), Expect = 8.4
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Frame = +3
Query: 204 RRLGPGSQYVRSTRDMSQCAEEA----PQLNSPQIIRDVMCGVAHM 329
RR GP + + ++ C P LN+ +IR+++CG+AHM
Sbjct: 791 RRAGPRQKVYFESDEVKACIVTCGGLCPGLNT--VIRELVCGLAHM 834
>02_05_0702 - 31027908-31027958,31028062-31029311,31029665-31029842,
31029955-31030017,31031597-31031704,31031772-31031836,
31031928-31032015,31032104-31032157,31032234-31032380,
31033358-31033429,31034077-31034226,31034317-31034430,
31034762-31034875,31035925-31036077,31037437-31037529,
31038202-31038318,31038984-31039086,31039192-31039376,
31039448-31039522,31040451-31040534,31041547-31041588,
31041668-31041847,31042109-31042162,31042239-31042280,
31042869-31042967,31043040-31043174,31043325-31043427,
31045061-31045134,31045227-31045270,31045393-31045471,
31045592-31045705,31045842-31045946,31046027-31046161,
31046447-31046546,31046870-31046883,31046936-31047004,
31047079-31047182,31047299-31047347,31047931-31048023,
31048102-31048210,31048619-31048755,31048851-31048928,
31049015-31049104,31049402-31049467,31049546-31049638,
31049711-31049839,31050024-31050122,31051366-31051512,
31051605-31051910
Length = 2050
Score = 27.1 bits (57), Expect = 8.4
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +3
Query: 252 SQCAEEAPQLNSPQIIRDVMCGVAHMPSRKLTEPEP 359
SQC E SP DVM V +PS +L E +P
Sbjct: 1737 SQCTSELKTEQSPH--EDVMAPVPVLPSTELDEQQP 1770
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,804,127
Number of Sequences: 37544
Number of extensions: 302825
Number of successful extensions: 1013
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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