Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0847X.Seq
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42097| Best HMM Match : DUF1605 (HMM E-Value=3e-15)                 29   1.6  
SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_6243| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.7  
SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)                  28   3.7  
SB_49312| Best HMM Match : Mucin (HMM E-Value=0.19)                    28   4.9  
SB_40637| Best HMM Match : IP_trans (HMM E-Value=4)                    28   4.9  
SB_20344| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_47784| Best HMM Match : Ank (HMM E-Value=1.4e-08)                   27   6.5  
SB_25421| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_17728| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0032)         27   6.5  
SB_9868| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.5  
SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013)                   27   8.6  

>SB_42097| Best HMM Match : DUF1605 (HMM E-Value=3e-15)
          Length = 889

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = +2

Query: 398 PPISNIPHHEALK---RIFPSEEVELKPHPKDIDDE 496
           P ++ I HH+ LK   R+F  E+ ++  HPK ++ E
Sbjct: 45  PNVARIEHHDKLKRPPRLFTQEDGKVALHPKSVNVE 80


>SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4994

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 201 HRRLGPGSQYVRSTRDMSQCAEEAPQLNSPQIIRDV 308
           HRRL   + +   +R M++      Q NSP++ RD+
Sbjct: 585 HRRLDFDTDFTEFSRQMNELEVYQAQCNSPEVARDL 620


>SB_6243| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 681

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 371 IFTSLIYNDPPISNIPHHEALKRIFPSEEV 460
           +F  L+YN   ++N P HE LK +  +EEV
Sbjct: 336 VFDVLLYNGKKLANTPLHERLK-LLETEEV 364


>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
          Length = 347

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +1

Query: 199 DIGAWVREASMSGLLAICRSV 261
           D G W+R+AS++G +  CR++
Sbjct: 48  DSGVWIRDASINGRVLNCRNI 68


>SB_49312| Best HMM Match : Mucin (HMM E-Value=0.19)
          Length = 925

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
 Frame = +2

Query: 335 EKIDRTRAHAGRIFTSLIYND-------PPISNIPHHEALKRIFPSEEVELKPH 475
           ++++++RAH  ++F  L+  D       PPI+++        + P  +VE+ PH
Sbjct: 783 QEMEKSRAHELKLFQMLLNQDRPAIPSPPPITSVQPAYTFAPVSPRRKVEVIPH 836


>SB_40637| Best HMM Match : IP_trans (HMM E-Value=4)
          Length = 173

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 310 CVASRTCRREN*PNQSPRGTDIHISHIQRSSDLEHSASR 426
           C++ R    E   +  PRG+ +HI  +  SS   H  SR
Sbjct: 80  CLSDRESDHEGFASNKPRGSVVHIPPLNFSSGENHEDSR 118


>SB_20344| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 153

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 98 HTSVSPMTASRRASAHFCVAS 36
          HT   P +A+RRAS+H+ + S
Sbjct: 13 HTEFIPFSANRRASSHYVITS 33


>SB_47784| Best HMM Match : Ank (HMM E-Value=1.4e-08)
          Length = 593

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 327 MPSRKLTEPEPTRDGYS-HLSYTTILRSRT 413
           MP R LT  +PTR GYS  L+ + I R+ T
Sbjct: 169 MPGRYLTGKKPTRYGYSTPLAKSNITRAET 198


>SB_25421| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 501

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +2

Query: 239 YSRYVAVCRRSPAVELSTNYQRRDVWRRAHAVEKIDRTRAHAGRIFTSLIYN 394
           + ++VA  RRS  +  +T Y+R  V     A   +D    H  R    + Y+
Sbjct: 330 FEQHVARMRRSGDLFFTTEYERIPVPEHVTATHSLDPVNQHKNRYINIVAYD 381


>SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2916

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = +1

Query: 109 GVRGGIDEHV-DDVVAALLECLAEY 180
           G+ G +++ V DDVVA L E LAEY
Sbjct: 760 GIHGHVNDDVNDDVVALLREQLAEY 784


>SB_17728| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0032)
          Length = 1293

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = +1

Query: 109 GVRGGIDEHV-DDVVAALLECLAEY 180
           G+ G +++ V DDVVA L E LAEY
Sbjct: 708 GIHGHVNDDVNDDVVALLREQLAEY 732


>SB_9868| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 471

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 16/58 (27%), Positives = 23/58 (39%)
 Frame = +3

Query: 234 RSTRDMSQCAEEAPQLNSPQIIRDVMCGVAHMPSRKLTEPEPTRDGYSHLSYTTILRS 407
           R+ R ++    E  QL  P              SRKL  P P    YS+++Y  +  S
Sbjct: 355 RTHRQVASAPSERKQLIRPPKSAQSTSSAMSRRSRKLRNPRPYSPVYSNINYNDVADS 412


>SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013)
          Length = 665

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 359 HAGRIFTSLIYNDPPISNIPHHEALKRIFPSEEVELKPHP 478
           H   ++ ++I   PP S+IPH   L    PS  +  + HP
Sbjct: 525 HCYHLYPTVIIYTPPSSSIPHRHHLYP--PSSSIPHRHHP 562


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,352,929
Number of Sequences: 59808
Number of extensions: 326992
Number of successful extensions: 987
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)