Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0847X.Seq
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78062-3|CAB01496.1| 1232|Caenorhabditis elegans Hypothetical pr...    39   0.002
Z49908-8|CAA90098.1|  153|Caenorhabditis elegans Hypothetical pr...    28   4.3  
U88171-1|AAB42251.2|  630|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z69634-6|CAD01081.2|  490|Caenorhabditis elegans Hypothetical pr...    27   10.0 

>Z78062-3|CAB01496.1| 1232|Caenorhabditis elegans Hypothetical protein
            F16D3.4 protein.
          Length = 1232

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 23/80 (28%), Positives = 33/80 (41%)
 Frame = +1

Query: 34   TEATQKWAEARRDAVIGLTEVCQXQGVRGGIDEHVDDVVAALLECLAEYTIDMMGDIGAW 213
            T +  KWA AR+  V  L  +          +         L + + +YT    GDIG +
Sbjct: 874  TSSDAKWALARQQTVFALNRISVNSSTET-FNRIGQKCFETLYKAMTDYTTSANGDIGRF 932

Query: 214  VREASMSGLLAICRSVPKKP 273
            VREASM  +  I      +P
Sbjct: 933  VREASMRAMSTILVDAKTEP 952


>Z49908-8|CAA90098.1|  153|Caenorhabditis elegans Hypothetical
           protein C07E3.9 protein.
          Length = 153

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 310 ITSLIICGEFNCGASSAHCDISRVDLTYWLPGPK 209
           + S  IC + N G  +A CD  ++ +  W   PK
Sbjct: 99  MNSTAICSDKNMGCKAALCDCDKIVVECWKKFPK 132


>U88171-1|AAB42251.2|  630|Caenorhabditis elegans Hypothetical
           protein F25F8.1 protein.
          Length = 630

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 25/63 (39%), Positives = 29/63 (46%)
 Frame = +3

Query: 198 RHRRLGPGSQYVRSTRDMSQCAEEAPQLNSPQIIRDVMCGVAHMPSRKLTEPEPTRDGYS 377
           R  R GP   YV S R+ S   EEAP+L S       +C V   PS   + P P  D  S
Sbjct: 244 RFVREGP---YVSSFREKSIPLEEAPRLGSAS--SSSICTVDTRPSNVSSLP-PLTDYNS 297

Query: 378 HLS 386
           H S
Sbjct: 298 HAS 300


>Z69634-6|CAD01081.2|  490|Caenorhabditis elegans Hypothetical
           protein B0001.8 protein.
          Length = 490

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 322 RTCRREN*P-NQSPRGTDIHISHIQRSSDLEHSASR 426
           R  RR+N P NQSPRG+    S I + SD  + + R
Sbjct: 198 RNSRRDNYPRNQSPRGSRHSRSPINQYSDERNRSPR 233


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,052,710
Number of Sequences: 27780
Number of extensions: 229745
Number of successful extensions: 680
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)