Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0847X.Seq
(499 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g60740.1 68416.m06795 tubulin folding cofactor D identical to... 52 3e-07
At5g16540.2 68418.m01935 zinc finger (CCCH-type) family protein ... 28 3.0
At4g13100.2 68417.m02042 zinc finger (C3HC4-type RING finger) fa... 28 3.0
At4g37890.2 68417.m05359 zinc finger (C3HC4-type RING finger) fa... 28 4.0
At4g37890.1 68417.m05358 zinc finger (C3HC4-type RING finger) fa... 28 4.0
At3g26920.1 68416.m03368 F-box family protein contains F-box dom... 27 7.0
At3g15380.1 68416.m01950 choline transporter-related contains we... 27 7.0
At5g17550.1 68418.m02059 peroxisomal protein PEX19 family protei... 27 9.3
At2g39100.1 68415.m04804 zinc finger (C3HC4-type RING finger) fa... 27 9.3
At2g02835.1 68415.m00229 hypothetical protein 27 9.3
At1g53480.1 68414.m06062 expressed protein 27 9.3
At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low si... 27 9.3
>At3g60740.1 68416.m06795 tubulin folding cofactor D identical to
tubulin folding cofactor D GI:20514263 from [Arabidopsis
thaliana]
Length = 1254
Score = 51.6 bits (118), Expect = 3e-07
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 10/90 (11%)
Frame = +1
Query: 1 VIRSLIECTKVTEATQKWAEARRDAVIGLTEVCQXQGVRGGIDEHVDD----------VV 150
V++ C + AEAR +AV GLT VC+ + D DD V+
Sbjct: 811 VLKLCSACKIEVNPEDRDAEARVNAVKGLTSVCETLTQKRASDPGNDDLSLFLLIKTEVM 870
Query: 151 AALLECLAEYTIDMMGDIGAWVREASMSGL 240
LL+ L +Y++D GD+G+WVREA++ GL
Sbjct: 871 DTLLKALDDYSVDNRGDVGSWVREAAVHGL 900
>At5g16540.2 68418.m01935 zinc finger (CCCH-type) family protein
identical to zinc finger protein 3 [Arabidopsis
thaliana] gi|4689376|gb|AAD27875; contains Pfam domain,
PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Length = 368
Score = 28.3 bits (60), Expect = 3.0
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 209 LGSGKPVCQVYSRYVAVCRRSPA 277
L SG+P+C YSRY +C+ P+
Sbjct: 281 LSSGEPLCVFYSRY-GICKFGPS 302
>At4g13100.2 68417.m02042 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 265
Score = 28.3 bits (60), Expect = 3.0
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Frame = +3
Query: 198 RHRRLG---PGSQYVRSTRDMSQCAEEAPQLNSPQIIRDVMCGVAHMPSRKLTEPEPTRD 368
R RLG S+ RS+RD+S AEEA + + V+ P L E D
Sbjct: 121 RFNRLGFLLTNSETNRSSRDVSDAAEEAAEREGRLRLGTVLAAEREPPRMSLMELLEDND 180
Query: 369 GYSH 380
G+ +
Sbjct: 181 GHMY 184
>At4g37890.2 68417.m05359 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 711
Score = 27.9 bits (59), Expect = 4.0
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +2
Query: 245 RYVAVCRRSPAVELSTNYQRRDVWRRAHAVEKIDRTRAHAGRI 373
R+VAV P V+ S WR A + K+ R H R+
Sbjct: 658 RHVAVKSPEPVVQKSEPLTPTSAWRAAERLAKVAIMRKHMNRV 700
>At4g37890.1 68417.m05358 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 739
Score = 27.9 bits (59), Expect = 4.0
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +2
Query: 245 RYVAVCRRSPAVELSTNYQRRDVWRRAHAVEKIDRTRAHAGRI 373
R+VAV P V+ S WR A + K+ R H R+
Sbjct: 686 RHVAVKSPEPVVQKSEPLTPTSAWRAAERLAKVAIMRKHMNRV 728
>At3g26920.1 68416.m03368 F-box family protein contains F-box domain
Pfam:PF00646
Length = 565
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -3
Query: 371 SVPRGLWFGQFSRRHVRDATHHV 303
SV G+W G RHVRD HV
Sbjct: 359 SVEVGMWIGIAYARHVRDLVLHV 381
>At3g15380.1 68416.m01950 choline transporter-related contains weak
similarity to CD92 protein [Homo sapiens]
gi|16945323|emb|CAC82175
Length = 700
Score = 27.1 bits (57), Expect = 7.0
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -1
Query: 277 CGASSAHCDISRVDLTYWL 221
CG+ H D+++++L YWL
Sbjct: 74 CGSKHRHRDLTQLELRYWL 92
>At5g17550.1 68418.m02059 peroxisomal protein PEX19 family protein
contains Pfam profile: PF04614 Pex19 protein family
Length = 245
Score = 26.6 bits (56), Expect = 9.3
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +1
Query: 31 VTEATQKWAEARRDAVIGLTEVCQXQGVRGGIDEHVDD 144
VTEA K E R+ V GL + Q G D V+D
Sbjct: 76 VTEALDKLREQTRETVKGLESLSSKQQPTGSDDAMVED 113
>At2g39100.1 68415.m04804 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 296
Score = 26.6 bits (56), Expect = 9.3
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 266 RSPAVELSTNYQRRDVWRRAHAVEKIDRTRAHAGRIFTSLIYND 397
R +V S +QR+ WR + +++ R H+ R+ SL ND
Sbjct: 151 RPGSVPDSVIFQRKLQWRASIYTKQLRAVRLHSRRLELSLAVND 194
>At2g02835.1 68415.m00229 hypothetical protein
Length = 198
Score = 26.6 bits (56), Expect = 9.3
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 243 RDMSQCAEEAPQLNSPQIIRDV-MCGVAHMPSRKLTEPEPTRDG 371
RD+++C+ ++ S + D + G+A MP R + E DG
Sbjct: 17 RDVAECSRVVSKIGSSATVTDDGLVGIAVMPERIIREDVQIGDG 60
>At1g53480.1 68414.m06062 expressed protein
Length = 193
Score = 26.6 bits (56), Expect = 9.3
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -1
Query: 424 VMRNVRDRRIVVYE-RCEYPSRVGSGSVNFLDGMCA 320
V+R R RRIVV+E CE P + G + + G+ A
Sbjct: 107 VLRRYRGRRIVVFELGCEDP--IDPGQIYMIQGVLA 140
>At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low
similarity to RNA helicase/RNAseIII CAF protein
[Arabidopsis thaliana] GI:6102610; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 1324
Score = 26.6 bits (56), Expect = 9.3
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +3
Query: 267 EAPQLNSPQIIRDVMCGVAHMPSRKLTEPEPTRDGYSHLSYTTILRS 407
E PQL+SP + + G + P RK+ + + Y+ +S TT LR+
Sbjct: 906 EFPQLSSPMRFSNELAGESSFPERKV---QHKCNDYNIVSTTTELRT 949
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,386,543
Number of Sequences: 28952
Number of extensions: 217531
Number of successful extensions: 683
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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