Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0845.Seq
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    30   0.26 
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    28   1.4  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    27   2.4  
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi...    26   4.2  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    26   4.2  
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    26   5.5  
SPBC31F10.15c |atp15||F0-ATPase epsilon subunit|Schizosaccharomy...    25   7.3  

>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +2

Query: 221 NKFSNLCQQLSDRLEPPVRQHLKNVYATLMMTCVSASAGVYVDMFTRFQAGFLS 382
           NKFS+ C+Q+  R+    +Q  + V   + M  +S S     +  T+ QA  LS
Sbjct: 412 NKFSSFCEQVKQRIPVVKQQRSEIVRNNIYMNFLSESLETSNNNLTKVQAELLS 465


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/57 (22%), Positives = 29/57 (50%)
 Frame = +2

Query: 263 EPPVRQHLKNVYATLMMTCVSASAGVYVDMFTRFQAGFLSAIVGAGLMLMLIATPDN 433
           E   + ++ N+   + ++ + A+  V V++ TR    +   IVG  ++   + TP+N
Sbjct: 745 EKSAKTYIDNLVGVMRLSVIKANDLVNVELPTRKSDPYARVIVGNSVVARTVYTPNN 801


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -2

Query: 597 SSSREACKSQGSAEQSSYYDRWV-NYTDIFNRGPMLMPDVNPNPSR*P 457
           S   +A  S  S E S+ YD +  N    ++R P+  P +  +P+R P
Sbjct: 390 SDISKAQSSSFSEEPSNIYDEYEQNLLSPWSRSPVASPSIQTDPNRNP 437


>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 749

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 447 LVFLPLSGVAINMSIRPAPTMADKNPAWNLVNIS 346
           LVFL  S   I+ +IRP+  + D    W L   S
Sbjct: 161 LVFLHGSAKVIHYNIRPSSVVVDAKGDWKLCGFS 194


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1010

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 522  TDIFNRGPMLMPDVNPN 472
            TD FNR P+ + DV PN
Sbjct: 971  TDPFNRTPLTLDDVTPN 987


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 656 VNSVINVPPRNSQLPRSASIAAAEKHAN 573
           V  V+N PPR S+  R  S+    +HA+
Sbjct: 372 VQEVLNPPPRESEAWRLKSLVGVLRHAD 399


>SPBC31F10.15c |atp15||F0-ATPase epsilon subunit|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 67

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 9/30 (30%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +2

Query: 203 KKKHEYNKFSNLCQQ-LSDRLEPPVRQHLK 289
           KK   Y+K++++C Q +   L+P ++  +K
Sbjct: 6   KKNFSYSKYASICSQTVRQALKPEIKNEVK 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,749,293
Number of Sequences: 5004
Number of extensions: 56588
Number of successful extensions: 160
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)