Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0845.Seq
         (661 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0195 + 1327071-1327187,1328060-1328203,1328340-1328431,132...    46   3e-05
10_01_0260 - 2726204-2727370                                           31   1.1  
03_01_0560 + 4162206-4162607                                           30   1.4  

>02_01_0195 +
           1327071-1327187,1328060-1328203,1328340-1328431,
           1329393-1329579,1329676-1329831,1329959-1330012
          Length = 249

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 27/89 (30%), Positives = 45/89 (50%)
 Frame = +2

Query: 257 RLEPPVRQHLKNVYATLMMTCVSASAGVYVDMFTRFQAGFLSAIVGAGLMLMLIATPDNG 436
           ++ P V+ HLK VY TL +   +++ G Y+ +      G L+ +   G +  L + P   
Sbjct: 28  QISPAVQSHLKLVYLTLCVALAASAVGAYLHVALNI-GGMLTMLGCVGSIAWLFSVPVFE 86

Query: 437 KNTNLRLGYLLGFGLTSGMSMGPLLNMSV 523
           +    R G LL   L  G S+GPL+ ++V
Sbjct: 87  ERK--RFGILLAAALLEGASVGPLIKLAV 113



 Score = 37.5 bits (83), Expect = 0.009
 Identities = 14/28 (50%), Positives = 22/28 (78%)
 Frame = +1

Query: 529 DPSIIITALLGTTLGFACFSAAAMLAER 612
           D SI++TA +GT + F CF+ AA++A+R
Sbjct: 116 DSSILVTAFVGTAIAFGCFTCAAIVAKR 143


>10_01_0260 - 2726204-2727370
          Length = 388

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -3

Query: 587 EKHANPRVVPSRAVI-MIDGSTTLTYSTGDPCSCLMLIQIQVDSRVV 450
           E +  P V+   A+  ++DGS  L +  G+ C CL LI   V++  +
Sbjct: 214 ELYEEPPVLVGEALYWLLDGSRILEFEFGNQCLCLALIDHPVENHAI 260


>03_01_0560 + 4162206-4162607
          Length = 133

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +2

Query: 353 FTRFQAGFLSAIVGAGLMLMLIATPDNGKNTNLRLGYLLGFGLTSGMSMG 502
           F  F  G   A+  A L L+L+A  D     +   G+L G  LT   S+G
Sbjct: 58  FLSFTIGTALALAAAYLALLLLAATDKMLGADAVTGFLWGADLTGAASLG 107


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,690,517
Number of Sequences: 37544
Number of extensions: 361353
Number of successful extensions: 822
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)