Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0845.Seq
         (661 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12968| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.36 
SB_3787| Best HMM Match : Pentapeptide_2 (HMM E-Value=3)               29   2.5  
SB_26174| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  

>SB_12968| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 104

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +1

Query: 532 PSIIITALLGTTLGFACFSAAAMLAERGS 618
           P I++TA   T + FACF+ +A+ AE+ S
Sbjct: 70  PLIVVTAFFATVMIFACFTVSALWAEQRS 98


>SB_3787| Best HMM Match : Pentapeptide_2 (HMM E-Value=3)
          Length = 324

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 606 SKHSSSREACKSQGSAEQSSYYDRWVNYTDIFNRG 502
           S + S R +  S GSA+ SS  D +V+Y +I+  G
Sbjct: 266 SSNGSKRSSNSSTGSAKHSSDSDDYVDYQEIYGDG 300


>SB_26174| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 885

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +1

Query: 460 LSTWIWINIRHEHGSPVEYVSVVDPSIIITALLGTTLGFACFSAAAMLAERGSW 621
           L  +  I +R  + +PV      +  + +T  + T L F CF  AA LA   +W
Sbjct: 733 LGCYTAILVRVRYSTPVNPRRGGNLKLTLTLFIATLLSFLCFLPAATLALHVTW 786


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,502,277
Number of Sequences: 59808
Number of extensions: 419222
Number of successful extensions: 937
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)