Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0845.Seq
         (661 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47120.1 68418.m05809 Bax inhibitor-1 putative / BI-1 putativ...    48   6e-06
At4g17580.1 68417.m02628 Bax inhibitor-1 family protein / BI-1 f...    42   4e-04
At5g47130.1 68418.m05810 Bax inhibitor-1 family / BI-1 family si...    41   6e-04
At4g36550.1 68417.m05190 U-box domain-containing protein low sim...    27   8.4  
At2g42710.1 68415.m05289 ribosomal protein L1 family protein           27   8.4  

>At5g47120.1 68418.m05809 Bax inhibitor-1 putative / BI-1 putative
           SP:Q9LD45: Bax inhibitor-1 (BI-1) (AtBI-1). [Mouse-ear
           cress]             {Arabidopsis thaliana}
          Length = 247

 Score = 48.0 bits (109), Expect = 6e-06
 Identities = 21/29 (72%), Positives = 24/29 (82%)
 Frame = +1

Query: 526 VDPSIIITALLGTTLGFACFSAAAMLAER 612
           VDPSI+ITA +GT + F CFSAAAMLA R
Sbjct: 114 VDPSILITAFVGTAIAFVCFSAAAMLARR 142



 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 27/89 (30%), Positives = 45/89 (50%)
 Frame = +2

Query: 257 RLEPPVRQHLKNVYATLMMTCVSASAGVYVDMFTRFQAGFLSAIVGAGLMLMLIATPDNG 436
           ++ P V+ HLK VY TL    V+++ G Y+ +      G L+ I   G M+ L++ P   
Sbjct: 27  QISPAVQNHLKRVYLTLCCALVASAFGAYLHVLWNI-GGILTTIGCIGTMIWLLSCPP-- 83

Query: 437 KNTNLRLGYLLGFGLTSGMSMGPLLNMSV 523
                RL  L    +  G S+GPL+ +++
Sbjct: 84  YEHQKRLSLLFVSAVLEGASVGPLIKVAI 112


>At4g17580.1 68417.m02628 Bax inhibitor-1 family protein / BI-1
           family protein similar to SP|Q9LD45 Bax inhibitor-1
           (BI-1) (AtBI-1) {Arabidopsis thaliana}; contains Pfam
           profile PF01027: Uncharacterized protein family UPF0005
          Length = 247

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 19/38 (50%), Positives = 25/38 (65%)
 Frame = +1

Query: 499 GSPVEYVSVVDPSIIITALLGTTLGFACFSAAAMLAER 612
           G  +  V   D S+++TA +GT + F CFSAAAMLA R
Sbjct: 107 GPMIMLVIDFDSSVLVTAFVGTAVAFVCFSAAAMLATR 144


>At5g47130.1 68418.m05810 Bax inhibitor-1 family / BI-1 family
           similar to SP|Q9LD45 Bax inhibitor-1 (BI-1) (AtBI-1)
           {Arabidopsis thaliana}
          Length = 187

 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 19/29 (65%), Positives = 22/29 (75%)
 Frame = +1

Query: 526 VDPSIIITALLGTTLGFACFSAAAMLAER 612
           +D SI+ITA LGT + F CFSA AMLA R
Sbjct: 58  IDSSILITAFLGTAVIFFCFSAVAMLARR 86


>At4g36550.1 68417.m05190 U-box domain-containing protein low
           similarity to immediate-early fungal elicitor protein
           CMPG1 [Petroselinum crispum] GI:14582200; contains Pfam
           profile PF04564: U-box domain
          Length = 577

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = +2

Query: 50  QNENYLFVLL*LV--KLEYCCCVILKAINI 133
           + EN + +LL L   K+EYCC V+ +A +I
Sbjct: 459 EQENAISILLQLCVQKIEYCCLVVREATDI 488


>At2g42710.1 68415.m05289 ribosomal protein L1 family protein
          Length = 415

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +2

Query: 389 VGAGLMLMLIATPDNGKNTNLRLGYLLGFGLTSGMSMG 502
           VGA +  +L+A P   K T+   GY+  F L S M  G
Sbjct: 357 VGAFMNALLLAKPAGLKKTSKYAGYVNAFHLCSTMGKG 394


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,225,837
Number of Sequences: 28952
Number of extensions: 289992
Number of successful extensions: 703
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)