Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0844x.Seq
         (484 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi...    32   0.040
SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces po...    26   3.4  
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   4.5  
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    25   6.0  
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    25   6.0  
SPBC3D6.05 |ptp4||phosphatidate cytidylyltransferase Ptp4 |Schiz...    25   7.9  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    25   7.9  

>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
           Hat1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 32.3 bits (70), Expect = 0.040
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +3

Query: 303 VVDGNDVLEFKLVRSVDDLENEETSFGPDMCHQVFGENENIFGYTDLHIKLYY 461
           V + N+ +E   +  V++   ++  + P   + +FG+ E I+GY DL++ + Y
Sbjct: 8   VHNANECIE---IVQVNEKHEKDCQYHPSNTYAIFGDAEVIYGYKDLNVTITY 57


>SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 218 FFNIAKMEVCNLHFNTDRKQILLYTSHCRKSS 123
           FF +  +      F TDR  + LY +H R+ S
Sbjct: 353 FFALILLRTAIFFFGTDRYSLPLYKTHARRFS 384


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = -3

Query: 209 IAKMEVCNLHFNTDRKQILLYTSHCRKSS*IVGTSRKQIFLASI 78
           + + E+C +H+N D  Q+      CR +    G S+ +    S+
Sbjct: 152 LLRQELCAIHYNLDPTQLSPDDPICRLAEITTGVSKVRAAFGSL 195


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 269 LTTDFPEQFPRKFYCQYFFNIAKMEVCNLHFNTDRKQILL 150
           L TDF E FP +   + F  + ++++C     + R + LL
Sbjct: 68  LFTDFTEVFPEEVSLRVFSYLDQLDLCKCKLMSKRWKRLL 107


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 321 RRSHQQLSGTKHQSFCKINNGFS 253
           RRS+Q  S +  QS+  + NGF+
Sbjct: 896 RRSYQSQSYSSRQSYTGVTNGFA 918


>SPBC3D6.05 |ptp4||phosphatidate cytidylyltransferase Ptp4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 218

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -3

Query: 80  IPSPWICLL*NGF 42
           IP PW+CL+ NGF
Sbjct: 176 IPFPWLCLI-NGF 187


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 344 PH*FEFQNVVPINN*VAQSISHFVKLTTDFPE 249
           P  FE ++ VPINN   QSI       T  P+
Sbjct: 640 PQVFESESNVPINNGPQQSIDKESNSNTQLPQ 671


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,145,201
Number of Sequences: 5004
Number of extensions: 44887
Number of successful extensions: 108
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)