Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0844x.Seq
         (484 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0578 + 10869627-10869702,10870489-10870555,10870813-108709...    30   0.85 
03_06_0621 - 35147070-35148359,35148499-35148579,35148665-351487...    29   2.0  
01_01_1079 - 8491955-8492755                                           29   2.0  
11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,551...    27   7.9  

>09_02_0578 +
           10869627-10869702,10870489-10870555,10870813-10870963,
           10871043-10871111,10871992-10872030,10872113-10872186,
           10872281-10872347,10872902-10873075,10873169-10873852
          Length = 466

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 324 LEFKLVRSVDDLEN-EETSFGPDMCHQVFGENENIFGYTDLHIKLYYSA 467
           L F   R+ D+  +   TS  P   +  FGE+  I+GY +L I ++ SA
Sbjct: 57  LVFDTARNPDEAGSANSTSLQPFDLNHFFGEDGKIYGYKNLKINVWISA 105


>03_06_0621 -
           35147070-35148359,35148499-35148579,35148665-35148741,
           35148792-35149298,35149405-35150278
          Length = 942

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
 Frame = +3

Query: 162 LSIGIEM*ITHLHFCNIKKILTIKFTRELLRKIRC*FYKMTDALC--HLVVDGNDVLEFK 335
           L+IGI      L    I  IL  ++ R   +KIR  +++    L    L+   N+V    
Sbjct: 526 LAIGISSGFGVLALTLIAAILFKRWKRSTRKKIRRAYFRKNKGLLLEQLISSSNNVTPNT 585

Query: 336 LVRSVDDLENEETSFGP 386
            + S++DLE    +F P
Sbjct: 586 RIFSLEDLEKATNNFDP 602


>01_01_1079 - 8491955-8492755
          Length = 266

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 260 DFPEQFPRKFYCQYFFNIAKMEVCNLH 180
           DF E+ PR  YC Y F      +C+ H
Sbjct: 116 DFAEEHPRDAYCMYCFMAFSTALCHHH 142


>11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,
            5513752-5514597,5515515-5515766,5522344-5525206
          Length = 1449

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = +1

Query: 4    HSVRQIDFGEYLGKPF*SKH---IQGDGIEAKKICFL 105
            H++ QID   Y G P  S H   I+  GIE K  CFL
Sbjct: 1245 HNLDQIDIEVYKGMPLVSPHLTKIELSGIELKN-CFL 1280


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,595,524
Number of Sequences: 37544
Number of extensions: 247714
Number of successful extensions: 534
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)