Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0844x.Seq
         (484 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10053| Best HMM Match : DUF402 (HMM E-Value=3.4)                    49   2e-06
SB_55599| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  
SB_50917| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  

>SB_10053| Best HMM Match : DUF402 (HMM E-Value=3.4)
          Length = 252

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 22/48 (45%), Positives = 30/48 (62%)
 Frame = +3

Query: 339 VRSVDDLENEETSFGPDMCHQVFGENENIFGYTDLHIKLYYSAGSLQT 482
           V S  D+ ++   F P   HQ FG++E IFGY  L ++LYY AG+L T
Sbjct: 38  VTSEKDVFDKGRQFHPAFSHQFFGDSETIFGYCGLEVQLYYHAGTLLT 85


>SB_55599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 988

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 314 PINN*VAQSISHFVKLTTDFPEQFPRKFYCQYFF 213
           P+NN  ++ I   V++   +  Q  R  YCQ++F
Sbjct: 819 PVNNSNSRFIQRTVEIMNSYCFQLIRDIYCQHYF 852


>SB_50917| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 325

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -1

Query: 250 SNSRVNFIVNIFLILQKWRCVI--YISIPIESKFCFTLLTAENLHE 119
           SN +   I+N+  IL +   +I  Y +I I+  FC T+ ++EN  E
Sbjct: 161 SNQKPTLILNVVAILLEIGLIIISYFAIWIKRVFCKTMNSSENQFE 206


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,057,240
Number of Sequences: 59808
Number of extensions: 301598
Number of successful extensions: 532
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)