Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0844x.Seq
         (484 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g25375.1 68414.m03149 metallo-beta-lactamase family protein         29   1.6  
At5g46520.1 68418.m05728 disease resistance protein (TIR-NBS-LRR...    27   6.6  
At5g46510.1 68418.m05727 disease resistance protein (TIR-NBS-LRR...    27   6.6  
At3g43990.1 68416.m04709 bromo-adjacent homology (BAH) domain-co...    27   6.6  
At3g20780.1 68416.m02628 topoisomerase 6 subunit B (TOP6B) nearl...    27   6.6  

>At1g25375.1 68414.m03149 metallo-beta-lactamase family protein
          Length = 524

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = +3

Query: 297 HLVVDGNDVLEFKLVRSVDDLENEETSFGPDMC 395
           +L +D +DV E++ VRSV     EE  FGPD C
Sbjct: 91  NLGIDISDVGEWRFVRSV-----EEPEFGPDSC 118


>At5g46520.1 68418.m05728 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1298

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 393 CHQVFGENENIFGYTDLHIKLYYSAGSL 476
           C   FGEN    G+ +L +++ + AGSL
Sbjct: 396 CQSAFGENSPPEGFEELVVEIAWLAGSL 423


>At5g46510.1 68418.m05727 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1353

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 393 CHQVFGENENIFGYTDLHIKLYYSAGSL 476
           C   FGEN    G+ +L +++ + AGSL
Sbjct: 357 CQSAFGENSPPEGFEELVVEIAWLAGSL 384


>At3g43990.1 68416.m04709 bromo-adjacent homology (BAH)
           domain-containing protein contains Pfam profile PF01426:
           BAH domain
          Length = 380

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 281 HFVKLTTDFPEQFPRKFYCQYFFNIAKMEVCNLHFNTDRKQI 156
           HF K  T+ P +    F+C   F  +    C ++F  D KQI
Sbjct: 135 HFGKWKTENPREIFFSFHCDEVFAESVKYKCLVYFVPDDKQI 176


>At3g20780.1 68416.m02628 topoisomerase 6 subunit B (TOP6B) nearly
           identical to topoisomerase 6 subunit B [Arabidopsis
           thaliana] GI:12331188
          Length = 670

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +3

Query: 312 GNDVLEFKLVRSVDDLENEETSFGPDMCHQVFGENENIFGYTDLHIKLYYSAGSL 476
           G+D++E K   S +  ++ E+        + F EN+NI G+ +    LY +   L
Sbjct: 3   GDDLVETKKGSSKNSKDSNESKLKQKSPAEFFAENKNIAGFDNPGKSLYTTVREL 57


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,756,827
Number of Sequences: 28952
Number of extensions: 220241
Number of successful extensions: 410
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)