Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0843.Seq
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    91   1e-19
SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo...    29   0.46 
SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    28   1.1  
SPBC577.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   1.9  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    27   3.3  
SPCC16C4.10 |||6-phosphogluconolactonase |Schizosaccharomyces po...    27   3.3  
SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr ...    26   4.3  
SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr 2...    26   5.7  
SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1 |Sc...    26   5.7  
SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces pom...    25   7.6  
SPAC5H10.04 |||NADPH dehydrogenase |Schizosaccharomyces pombe|ch...    25   10.0 

>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 91.5 bits (217), Expect = 1e-19
 Identities = 42/99 (42%), Positives = 67/99 (67%)
 Frame = +2

Query: 209 GNQSCFYFFQHSHHGTDKFICVREKVGETAEVVIIDMADPTNPIRRPISADSAIMNPASK 388
           G Q   + F +    +DK++CVR+      +VVI+D+ DP+N +RRPISADS I++P  K
Sbjct: 19  GIQPSSFGFANVTLESDKYVCVRDNPNGVNQVVIVDLEDPSNVLRRPISADSVILHPKKK 78

Query: 389 VIALKGKAGVEAQKTLQIFNIEMKSKMKAHTMTEDIVFW 505
           +IALK      AQ+ LQ+F++E K+K+ ++ M +D+V+W
Sbjct: 79  IIALK------AQRQLQVFDLEAKAKINSYVMNQDVVYW 111



 Score = 60.5 bits (140), Expect = 2e-10
 Identities = 27/54 (50%), Positives = 39/54 (72%)
 Frame = +1

Query: 511 ISLNTLALVTKMSVYHWSMEGDSTPVKMFDRHSSLADCQIINYRTDPKQQWLLL 672
           IS + + +VT  SV+HW++ G S PVKMFDRHSSL   QII+Y+++  ++W  L
Sbjct: 114 ISDSVIGMVTDTSVFHWTVSG-SDPVKMFDRHSSLNGTQIISYKSNYNEEWFTL 166



 Score = 43.2 bits (97), Expect = 4e-05
 Identities = 20/33 (60%), Positives = 24/33 (72%)
 Frame = +3

Query: 156 MAQVLPIRFQEHLQLTNVGINPASISFNTLTME 254
           MAQ LPIRF E LQL +VGI P+S  F  +T+E
Sbjct: 1   MAQQLPIRFSEVLQLASVGIQPSSFGFANVTLE 33


>SPBC2A9.06c |||di-trans,
           poly-cis-decaprenylcistransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
 Frame = -2

Query: 379 WIHDSRVGT-DWSSNWICWIC-HINN---DNFCSLTNLLANTDKLVRSMVRVLKEIE 224
           W+  S  G  DW+ NW+ W C ++ N    + CS   +  +T KL +    +   IE
Sbjct: 12  WVIQSVYGAWDWAKNWVFWTCSYLLNFLYHHHCSRDLIRRDTKKLKKKPKHIAVIIE 68


>SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 266

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -2

Query: 340 NWICWICHINNDNFCSLTNLLANTDKLVRSMVRVLK-EIEAGLIPTFVSCKCS 185
           NWI  I ++ N  F    N     + L R    +LK E++  ++P  V+C CS
Sbjct: 87  NWI--ITYLENSEFTK-ENYAQMINSLYRYQDAILKSELKDSILPKLVNCACS 136


>SPBC577.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 239

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = -2

Query: 403 FQSNDFTSWIHDSRVGTDWSSNWICWICHINNDNFCSLTNLLANTDKLVRSMVRVLK 233
           + S DF S     ++  D     + WIC + ND     + L ++T    +S+VR +K
Sbjct: 174 YDSVDFVS----KKLDGDGKEEGVLWICAVRNDYGSMFSGLFSDT-TFTKSLVRQVK 225


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 181 FKNIYSLQMWESILLLFLSTLSPWNGQVYL 270
           FKN+ S + W  + L F ST++P    V+L
Sbjct: 157 FKNLLSEEKWPHVWLKFGSTIAPIVTDVFL 186


>SPCC16C4.10 |||6-phosphogluconolactonase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 257

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -2

Query: 268 DKLVRSMVRVLKEIEAGLIPTFVSCKCS*NRIGNTCAMFIDHSVLHK 128
           D+  + +V V        +P F          G+TC++F DH VL +
Sbjct: 120 DEYEKQLVHVFANSSTVKVPVFDLLLLGCGPDGHTCSLFPDHEVLQE 166


>SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 392

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 508 LPENNVFGHGVRLHFGFHLDIENL 437
           + ENNV+GH ++ HF    D  N+
Sbjct: 1   MAENNVYGHEMKKHFMLDPDYVNV 24


>SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 383 SKVIALKGKAGVEAQKTLQIFNIEMKSKMKAH 478
           S  +A KG   V  + T+ + NI+   K+ AH
Sbjct: 341 SASLANKGATAVTIKDTIMVINIQSNRKISAH 372


>SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 215

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 589 KMFDRHSSLADCQIINYRTD 648
           ++ DRH +L+DC + +Y  D
Sbjct: 121 EIIDRHINLSDCSVYSYTPD 140


>SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 292

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +3

Query: 486 PKTLFSGRDFTEHTRSGHQDVGVPLVDGRRLDT 584
           P+ L  G D  E  R  HQD+G  L     L T
Sbjct: 238 PQKLVLGHDSLELIRKQHQDIGEELESNVALST 270


>SPAC5H10.04 |||NADPH dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 382

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 178 RIGNTCAMFIDHSVLHKPKTKKRAT 104
           ++GN   M + H ++H P T+ RAT
Sbjct: 12  KVGN---MLLQHRIVHAPMTRLRAT 33


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,877,617
Number of Sequences: 5004
Number of extensions: 60724
Number of successful extensions: 182
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)