Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0843.Seq
(674 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0029 + 248725-248769,248870-249074,250040-250128,250237-25... 103 1e-22
11_01_0030 + 233285-233329,233439-233643,234637-234725,234834-23... 103 1e-22
08_01_0345 + 3055522-3055827,3055968-3056022,3056744-3056919,305... 30 1.9
02_01_0425 - 3102629-3104692,3106505-3108546,3109918-3109989,311... 29 2.6
01_07_0175 - 41715304-41716760,41717200-41717500,41718109-41718369 29 2.6
04_04_0764 - 27889257-27889394,27889472-27890128,27904516-279045... 29 3.4
02_01_0407 - 2963907-2964063,2965158-2965311,2965427-2968527,296... 29 4.5
11_06_0657 + 25938382-25938443,25938511-25938718,25939222-259392... 28 5.9
01_06_0211 + 27571069-27571128,27571563-27571706 28 5.9
01_03_0107 - 12613491-12613538,12613906-12614139,12614682-126147... 28 5.9
>12_01_0029 +
248725-248769,248870-249074,250040-250128,250237-250315,
250429-250556,250764-250862,250953-251061,251301-251380,
251464-251691,251768-251833,251970-252086,252538-252735,
252847-252963,253056-253115,253228-253314,253419-253502,
253623-253757,253837-253899,253979-254083,254174-254286,
254374-254626,254715-254851,254970-255248,255352-256354,
256450-256935,257023-257193,257285-257470,257820-257942,
258024-258134,258225-258395
Length = 1708
Score = 103 bits (247), Expect = 1e-22
Identities = 49/95 (51%), Positives = 67/95 (70%)
Frame = +2
Query: 224 FYFFQHSHHGTDKFICVREKVGETAEVVIIDMADPTNPIRRPISADSAIMNPASKVIALK 403
F F H ++K+ICVRE + + VVI+DMA P P+RRPI+ADSA+MNP ++++ALK
Sbjct: 25 FVTFTHVTMESEKYICVRETSPQNS-VVIVDMAMPAQPLRRPITADSALMNPNTRILALK 83
Query: 404 GKAGVEAQKTLQIFNIEMKSKMKAHTMTEDIVFWK 508
+ Q LQIFNIE K+K+K+H M E +VFWK
Sbjct: 84 AQIPGTTQDHLQIFNIEAKTKIKSHQMPEQVVFWK 118
Score = 79.0 bits (186), Expect = 3e-15
Identities = 35/58 (60%), Positives = 45/58 (77%)
Frame = +1
Query: 499 FLEGISLNTLALVTKMSVYHWSMEGDSTPVKMFDRHSSLADCQIINYRTDPKQQWLLL 672
F + I+ L LVT+ SVYHWS+EGDS P KMFDR ++LA+ QIINYR DP ++WL+L
Sbjct: 116 FWKWITPKLLGLVTQTSVYHWSIEGDSEPAKMFDRTANLANNQIINYRCDPSEKWLVL 173
>11_01_0030 +
233285-233329,233439-233643,234637-234725,234834-234912,
235048-235175,235383-235481,235572-235680,235920-235999,
236083-236310,236387-236452,236589-236705,237142-237339,
237451-237567,237660-237719,237832-237918,238023-238106,
238233-238367,238446-238508,238588-238692,238781-238893,
238981-239233,239322-239458,239577-239855,239958-240960,
241054-241539,241627-241797,241890-242075,242426-242548,
242630-242740,242834-243004
Length = 1708
Score = 103 bits (247), Expect = 1e-22
Identities = 49/95 (51%), Positives = 67/95 (70%)
Frame = +2
Query: 224 FYFFQHSHHGTDKFICVREKVGETAEVVIIDMADPTNPIRRPISADSAIMNPASKVIALK 403
F F H ++K+ICVRE + + VVI+DMA P P+RRPI+ADSA+MNP ++++ALK
Sbjct: 25 FVTFTHVTMESEKYICVRETSPQNS-VVIVDMAMPAQPLRRPITADSALMNPNTRILALK 83
Query: 404 GKAGVEAQKTLQIFNIEMKSKMKAHTMTEDIVFWK 508
+ Q LQIFNIE K+K+K+H M E +VFWK
Sbjct: 84 AQIPGTTQDHLQIFNIEAKTKIKSHQMPEQVVFWK 118
Score = 79.0 bits (186), Expect = 3e-15
Identities = 35/58 (60%), Positives = 45/58 (77%)
Frame = +1
Query: 499 FLEGISLNTLALVTKMSVYHWSMEGDSTPVKMFDRHSSLADCQIINYRTDPKQQWLLL 672
F + I+ L LVT+ SVYHWS+EGDS P KMFDR ++LA+ QIINYR DP ++WL+L
Sbjct: 116 FWKWITPKLLGLVTQTSVYHWSIEGDSEPAKMFDRTANLANNQIINYRCDPSEKWLVL 173
>08_01_0345 +
3055522-3055827,3055968-3056022,3056744-3056919,
3057104-3057232,3057313-3057572,3057688-3058001,
3058268-3058491,3058862-3059214,3059489-3059916,
3060031-3061514
Length = 1242
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 272 VREKVGETAEVVIIDMADPTNPIRRPISADSAIMNPASKVIALKGKAG 415
+ EKV E+ +D P+ + +PI ++ PA KV+AL G +G
Sbjct: 349 ILEKVTGNIEIREVDFMYPSR-VDKPILRSFSLSIPAGKVVALVGSSG 395
>02_01_0425 - 3102629-3104692,3106505-3108546,3109918-3109989,
3110157-3111444
Length = 1821
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = +1
Query: 421 SSKNTSNFQYRDEIQNEGAHHDRRHCFLEGISLNTLALVTKMSVYHWSMEGDSTP 585
+S ++S+ R + + +D C EGI+ T A +T++S+ +EG +P
Sbjct: 1147 ASSSSSSLASRRTVASPSWQNDTDCCTWEGITCGTDATITEISLASKGLEGQISP 1201
>01_07_0175 - 41715304-41716760,41717200-41717500,41718109-41718369
Length = 672
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +2
Query: 275 REKVGETAEVVIIDMADPTNPIRRPI 352
RE+ GE A+ ++ID+A +PI +P+
Sbjct: 629 RERYGEIAQALLIDLAQKGDPILKPM 654
>04_04_0764 -
27889257-27889394,27889472-27890128,27904516-27904572,
27904935-27905032,27905047-27905113
Length = 338
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 374 NPASKVIALKGKAGVEAQKTLQ 439
NPA KV+A+ AG+E+QK L+
Sbjct: 213 NPAEKVVAVPMTAGIESQKLLK 234
>02_01_0407 -
2963907-2964063,2965158-2965311,2965427-2968527,
2968684-2968697
Length = 1141
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Frame = +1
Query: 409 SWC*SSKNTSNFQYRDEIQNEGA-----HHDRRHCFLEGISLNTLALVTKMSVYHWSMEG 573
S C + S Q+ E+ +G +DR C EGI+ N VT +S+ +EG
Sbjct: 31 SSCTEQEKGSLHQFLAELSQDGNLSMSWRNDRNCCVWEGITCNRNGAVTDISLQSKGLEG 90
Query: 574 DSTP 585
+P
Sbjct: 91 HISP 94
>11_06_0657 +
25938382-25938443,25938511-25938718,25939222-25939268,
25939473-25939805,25940529-25940613,25940689-25940884,
25941012-25941182,25941261-25941318,25941429-25941657,
25942296-25943183
Length = 758
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/42 (26%), Positives = 17/42 (40%)
Frame = -2
Query: 379 WIHDSRVGTDWSSNWICWICHINNDNFCSLTNLLANTDKLVR 254
W D W +N +C +C N+ C L T ++ R
Sbjct: 622 WTSDWLAARGWQNNGLCPLCRETNETACHLVAFCRYTRRIWR 663
>01_06_0211 + 27571069-27571128,27571563-27571706
Length = 67
Score = 28.3 bits (60), Expect = 5.9
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 166 YYRYGFKNIYSLQMWE 213
Y+ YG+ NI+ L MWE
Sbjct: 7 YHTYGYNNIFILDMWE 22
>01_03_0107 -
12613491-12613538,12613906-12614139,12614682-12614713,
12616021-12616176,12617972-12618159,12618242-12618324,
12618821-12618976,12620320-12621162,12621197-12621550,
12621962-12623125
Length = 1085
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -2
Query: 451 DIENLKCFLSFNTSFAFQSNDFTSWIHDSRVGTDWSSNWIC 329
D E F+ FN+SF + DF +S TD + +IC
Sbjct: 340 DFEGHALFIGFNSSFFLREEDFPMLTPNSVYCTDDTVTYIC 380
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,311,520
Number of Sequences: 37544
Number of extensions: 377881
Number of successful extensions: 1036
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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