Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0843.Seq
(674 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18599| Best HMM Match : No HMM Matches (HMM E-Value=.) 82 3e-16
SB_11564| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12
SB_35858| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.49
SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.49
SB_12474| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.49
SB_40302| Best HMM Match : Peptidase_S15 (HMM E-Value=8e-39) 30 2.0
SB_32451| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_55830| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_42811| Best HMM Match : SRCR (HMM E-Value=0) 28 7.9
SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_18599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1501
Score = 82.2 bits (194), Expect = 3e-16
Identities = 38/45 (84%), Positives = 41/45 (91%)
Frame = +2
Query: 254 TDKFICVREKVGETAEVVIIDMADPTNPIRRPISADSAIMNPASK 388
+DKFICVREKVGETA+VVIID+AD NP RRPISADSAIMNP SK
Sbjct: 3 SDKFICVREKVGETAQVVIIDLADANNPTRRPISADSAIMNPKSK 47
>SB_11564| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 306
Score = 33.9 bits (74), Expect = 0.12
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = -1
Query: 629 IWQSASDECLSNIFTGVESPSIDQWYTDILVTRASVFS-EIPSRKQCLRSWCAPSFWI 459
IWQS + SN F ES I Q +T L+T +S+ S + +C + +P+F++
Sbjct: 47 IWQSVTHHISSNFFLDPESVEIWQCHTTALLTFSSILSVGMWKLAECCTIYISPNFFL 104
>SB_35858| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 708
Score = 31.9 bits (69), Expect = 0.49
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +2
Query: 545 CRCTT-GRWKATRHP*RCSTGIRRLPIARSLTTGRIRSNSGYC 670
CR TT G WK +H C+T IR+L ++ LTT I S G+C
Sbjct: 177 CRVTTNGEWKLPKHILLCTT-IRQLYRSKQLTT--IISRLGHC 216
>SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 468
Score = 31.9 bits (69), Expect = 0.49
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Frame = -1
Query: 674 TSSSH--CCFGSV--L*LMIWQSASDECLSNIFTGVESPSIDQWYTDILVTRASVFSEIP 507
T S H CFG++ L L I D+C+ F ++P+++ + + + ++FS+I
Sbjct: 3 TKSGHEPNCFGTLVMLILTINNYNDDDCVETAFITNKTPNVNNIFIASEILK-TIFSQIS 61
Query: 506 SRKQCLRSWCAPSFWISSRY 447
C R + +W+ Y
Sbjct: 62 QTAHCHRLYKRCKYWVLEHY 81
>SB_12474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1393
Score = 31.9 bits (69), Expect = 0.49
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +2
Query: 545 CRCTT-GRWKATRHP*RCSTGIRRLPIARSLTTGRIRSNSGYC 670
CR TT G WK +H C+T IR+L ++ LTT I S G+C
Sbjct: 385 CRVTTNGEWKLPKHILLCTT-IRQLYRSKQLTT--IISRLGHC 424
>SB_40302| Best HMM Match : Peptidase_S15 (HMM E-Value=8e-39)
Length = 621
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -2
Query: 352 DWSSNWICWICHINNDNFCSLTNLLANTDKLVRS 251
DW WIC + +N C L +L ++KLV++
Sbjct: 214 DWPGEWICEEQWPSTNNVCHLYSLCQKSEKLVQT 247
>SB_32451| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 924
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +2
Query: 242 SHHGTDKFICVREKVGETAEVVIIDMADPTNPIRRPISADSA 367
++ T IC K+ ETAEV + D +P + +R S+DSA
Sbjct: 314 TYGATSGKICFECKLTETAEVDLPDTEEPKHFVRVGWSSDSA 355
>SB_55830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 431
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Frame = +2
Query: 227 YFFQHSHHGTDKFICVREKVGETAEVVIIDMADPTNPIRRPI-SADSAIMNPASKVIALK 403
YFF H D + RE V + + + + DP P++ + D+ K + +
Sbjct: 45 YFFIRQLHNRDDVLSAREAVLQHIQSKVPEAFDPDKPLQDGVLKLDTEDKKNKFKEVTSR 104
Query: 404 GKAGVEAQKTLQIFNI 451
+A A +TL NI
Sbjct: 105 IQATTTATRTLTAENI 120
>SB_42811| Best HMM Match : SRCR (HMM E-Value=0)
Length = 854
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 229 IEAGLIPTFVSCKCS*NRIGNTCAMFIDHSV 137
+ +G P F CKC+ G TC +FI SV
Sbjct: 626 VSSGKEPDF-DCKCTREYYGKTCDVFIGESV 655
>SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1200
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +1
Query: 448 YRDEIQNEGAHHDRRHCFLEGISLNTLALVTKMSVYHWSM 567
+R+ +Q + A D++ SLN++ + +SV HWS+
Sbjct: 500 HREHLQEKSALLDKKDLSGSSTSLNSIGKSSGVSVGHWSL 539
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,618,872
Number of Sequences: 59808
Number of extensions: 448709
Number of successful extensions: 1366
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1366
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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