Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0843.Seq
         (674 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z14133-1|CAA78507.1| 1678|Drosophila melanogaster clathrin heavy...   139   4e-33
AY119615-1|AAM50269.1| 1678|Drosophila melanogaster LD43101p pro...   139   4e-33
AE014298-2242|AAS65353.1| 1678|Drosophila melanogaster CG9012-PD...   139   4e-33
AE014298-2241|AAS65352.1| 1678|Drosophila melanogaster CG9012-PC...   139   4e-33
AE014298-2240|AAN09367.1| 1678|Drosophila melanogaster CG9012-PB...   139   4e-33
AE014298-2239|AAF48522.1| 1678|Drosophila melanogaster CG9012-PA...   139   4e-33

>Z14133-1|CAA78507.1| 1678|Drosophila melanogaster clathrin heavy
           chain protein.
          Length = 1678

 Score =  139 bits (336), Expect = 4e-33
 Identities = 70/85 (82%), Positives = 74/85 (87%)
 Frame = +2

Query: 254 TDKFICVREKVGETAEVVIIDMADPTNPIRRPISADSAIMNPASKVIALKGKAGVEAQKT 433
           +DKFICVREKV +TA+VVIIDM D TNP RRPISADSAIMNPASKVIALK      AQKT
Sbjct: 34  SDKFICVREKVNDTAQVVIIDMNDATNPTRRPISADSAIMNPASKVIALK------AQKT 87

Query: 434 LQIFNIEMKSKMKAHTMTEDIVFWK 508
           LQIFNIEMKSKMKAHTM ED+VFWK
Sbjct: 88  LQIFNIEMKSKMKAHTMNEDVVFWK 112



 Score = 95.5 bits (227), Expect = 6e-20
 Identities = 44/58 (75%), Positives = 48/58 (82%)
 Frame = +1

Query: 499 FLEGISLNTLALVTKMSVYHWSMEGDSTPVKMFDRHSSLADCQIINYRTDPKQQWLLL 672
           F + ISLNTLALVT+ SV+HWSMEGDS P KMFDRHSSL  CQIINYR +  QQWLLL
Sbjct: 110 FWKWISLNTLALVTETSVFHWSMEGDSMPQKMFDRHSSLNGCQIINYRCNASQQWLLL 167



 Score = 57.2 bits (132), Expect = 2e-08
 Identities = 27/33 (81%), Positives = 28/33 (84%)
 Frame = +3

Query: 156 MAQVLPIRFQEHLQLTNVGINPASISFNTLTME 254
           M Q LPIRFQEHLQLTNVGIN  S SF+TLTME
Sbjct: 1   MTQPLPIRFQEHLQLTNVGINANSFSFSTLTME 33


>AY119615-1|AAM50269.1| 1678|Drosophila melanogaster LD43101p
           protein.
          Length = 1678

 Score =  139 bits (336), Expect = 4e-33
 Identities = 70/85 (82%), Positives = 74/85 (87%)
 Frame = +2

Query: 254 TDKFICVREKVGETAEVVIIDMADPTNPIRRPISADSAIMNPASKVIALKGKAGVEAQKT 433
           +DKFICVREKV +TA+VVIIDM D TNP RRPISADSAIMNPASKVIALK      AQKT
Sbjct: 34  SDKFICVREKVNDTAQVVIIDMNDATNPTRRPISADSAIMNPASKVIALK------AQKT 87

Query: 434 LQIFNIEMKSKMKAHTMTEDIVFWK 508
           LQIFNIEMKSKMKAHTM ED+VFWK
Sbjct: 88  LQIFNIEMKSKMKAHTMNEDVVFWK 112



 Score = 95.5 bits (227), Expect = 6e-20
 Identities = 44/58 (75%), Positives = 48/58 (82%)
 Frame = +1

Query: 499 FLEGISLNTLALVTKMSVYHWSMEGDSTPVKMFDRHSSLADCQIINYRTDPKQQWLLL 672
           F + ISLNTLALVT+ SV+HWSMEGDS P KMFDRHSSL  CQIINYR +  QQWLLL
Sbjct: 110 FWKWISLNTLALVTETSVFHWSMEGDSMPQKMFDRHSSLNGCQIINYRCNASQQWLLL 167



 Score = 57.2 bits (132), Expect = 2e-08
 Identities = 27/33 (81%), Positives = 28/33 (84%)
 Frame = +3

Query: 156 MAQVLPIRFQEHLQLTNVGINPASISFNTLTME 254
           M Q LPIRFQEHLQLTNVGIN  S SF+TLTME
Sbjct: 1   MTQPLPIRFQEHLQLTNVGINANSFSFSTLTME 33


>AE014298-2242|AAS65353.1| 1678|Drosophila melanogaster CG9012-PD,
           isoform D protein.
          Length = 1678

 Score =  139 bits (336), Expect = 4e-33
 Identities = 70/85 (82%), Positives = 74/85 (87%)
 Frame = +2

Query: 254 TDKFICVREKVGETAEVVIIDMADPTNPIRRPISADSAIMNPASKVIALKGKAGVEAQKT 433
           +DKFICVREKV +TA+VVIIDM D TNP RRPISADSAIMNPASKVIALK      AQKT
Sbjct: 34  SDKFICVREKVNDTAQVVIIDMNDATNPTRRPISADSAIMNPASKVIALK------AQKT 87

Query: 434 LQIFNIEMKSKMKAHTMTEDIVFWK 508
           LQIFNIEMKSKMKAHTM ED+VFWK
Sbjct: 88  LQIFNIEMKSKMKAHTMNEDVVFWK 112



 Score = 95.5 bits (227), Expect = 6e-20
 Identities = 44/58 (75%), Positives = 48/58 (82%)
 Frame = +1

Query: 499 FLEGISLNTLALVTKMSVYHWSMEGDSTPVKMFDRHSSLADCQIINYRTDPKQQWLLL 672
           F + ISLNTLALVT+ SV+HWSMEGDS P KMFDRHSSL  CQIINYR +  QQWLLL
Sbjct: 110 FWKWISLNTLALVTETSVFHWSMEGDSMPQKMFDRHSSLNGCQIINYRCNASQQWLLL 167



 Score = 57.2 bits (132), Expect = 2e-08
 Identities = 27/33 (81%), Positives = 28/33 (84%)
 Frame = +3

Query: 156 MAQVLPIRFQEHLQLTNVGINPASISFNTLTME 254
           M Q LPIRFQEHLQLTNVGIN  S SF+TLTME
Sbjct: 1   MTQPLPIRFQEHLQLTNVGINANSFSFSTLTME 33


>AE014298-2241|AAS65352.1| 1678|Drosophila melanogaster CG9012-PC,
           isoform C protein.
          Length = 1678

 Score =  139 bits (336), Expect = 4e-33
 Identities = 70/85 (82%), Positives = 74/85 (87%)
 Frame = +2

Query: 254 TDKFICVREKVGETAEVVIIDMADPTNPIRRPISADSAIMNPASKVIALKGKAGVEAQKT 433
           +DKFICVREKV +TA+VVIIDM D TNP RRPISADSAIMNPASKVIALK      AQKT
Sbjct: 34  SDKFICVREKVNDTAQVVIIDMNDATNPTRRPISADSAIMNPASKVIALK------AQKT 87

Query: 434 LQIFNIEMKSKMKAHTMTEDIVFWK 508
           LQIFNIEMKSKMKAHTM ED+VFWK
Sbjct: 88  LQIFNIEMKSKMKAHTMNEDVVFWK 112



 Score = 95.5 bits (227), Expect = 6e-20
 Identities = 44/58 (75%), Positives = 48/58 (82%)
 Frame = +1

Query: 499 FLEGISLNTLALVTKMSVYHWSMEGDSTPVKMFDRHSSLADCQIINYRTDPKQQWLLL 672
           F + ISLNTLALVT+ SV+HWSMEGDS P KMFDRHSSL  CQIINYR +  QQWLLL
Sbjct: 110 FWKWISLNTLALVTETSVFHWSMEGDSMPQKMFDRHSSLNGCQIINYRCNASQQWLLL 167



 Score = 57.2 bits (132), Expect = 2e-08
 Identities = 27/33 (81%), Positives = 28/33 (84%)
 Frame = +3

Query: 156 MAQVLPIRFQEHLQLTNVGINPASISFNTLTME 254
           M Q LPIRFQEHLQLTNVGIN  S SF+TLTME
Sbjct: 1   MTQPLPIRFQEHLQLTNVGINANSFSFSTLTME 33


>AE014298-2240|AAN09367.1| 1678|Drosophila melanogaster CG9012-PB,
           isoform B protein.
          Length = 1678

 Score =  139 bits (336), Expect = 4e-33
 Identities = 70/85 (82%), Positives = 74/85 (87%)
 Frame = +2

Query: 254 TDKFICVREKVGETAEVVIIDMADPTNPIRRPISADSAIMNPASKVIALKGKAGVEAQKT 433
           +DKFICVREKV +TA+VVIIDM D TNP RRPISADSAIMNPASKVIALK      AQKT
Sbjct: 34  SDKFICVREKVNDTAQVVIIDMNDATNPTRRPISADSAIMNPASKVIALK------AQKT 87

Query: 434 LQIFNIEMKSKMKAHTMTEDIVFWK 508
           LQIFNIEMKSKMKAHTM ED+VFWK
Sbjct: 88  LQIFNIEMKSKMKAHTMNEDVVFWK 112



 Score = 95.5 bits (227), Expect = 6e-20
 Identities = 44/58 (75%), Positives = 48/58 (82%)
 Frame = +1

Query: 499 FLEGISLNTLALVTKMSVYHWSMEGDSTPVKMFDRHSSLADCQIINYRTDPKQQWLLL 672
           F + ISLNTLALVT+ SV+HWSMEGDS P KMFDRHSSL  CQIINYR +  QQWLLL
Sbjct: 110 FWKWISLNTLALVTETSVFHWSMEGDSMPQKMFDRHSSLNGCQIINYRCNASQQWLLL 167



 Score = 57.2 bits (132), Expect = 2e-08
 Identities = 27/33 (81%), Positives = 28/33 (84%)
 Frame = +3

Query: 156 MAQVLPIRFQEHLQLTNVGINPASISFNTLTME 254
           M Q LPIRFQEHLQLTNVGIN  S SF+TLTME
Sbjct: 1   MTQPLPIRFQEHLQLTNVGINANSFSFSTLTME 33


>AE014298-2239|AAF48522.1| 1678|Drosophila melanogaster CG9012-PA,
           isoform A protein.
          Length = 1678

 Score =  139 bits (336), Expect = 4e-33
 Identities = 70/85 (82%), Positives = 74/85 (87%)
 Frame = +2

Query: 254 TDKFICVREKVGETAEVVIIDMADPTNPIRRPISADSAIMNPASKVIALKGKAGVEAQKT 433
           +DKFICVREKV +TA+VVIIDM D TNP RRPISADSAIMNPASKVIALK      AQKT
Sbjct: 34  SDKFICVREKVNDTAQVVIIDMNDATNPTRRPISADSAIMNPASKVIALK------AQKT 87

Query: 434 LQIFNIEMKSKMKAHTMTEDIVFWK 508
           LQIFNIEMKSKMKAHTM ED+VFWK
Sbjct: 88  LQIFNIEMKSKMKAHTMNEDVVFWK 112



 Score = 95.5 bits (227), Expect = 6e-20
 Identities = 44/58 (75%), Positives = 48/58 (82%)
 Frame = +1

Query: 499 FLEGISLNTLALVTKMSVYHWSMEGDSTPVKMFDRHSSLADCQIINYRTDPKQQWLLL 672
           F + ISLNTLALVT+ SV+HWSMEGDS P KMFDRHSSL  CQIINYR +  QQWLLL
Sbjct: 110 FWKWISLNTLALVTETSVFHWSMEGDSMPQKMFDRHSSLNGCQIINYRCNASQQWLLL 167



 Score = 57.2 bits (132), Expect = 2e-08
 Identities = 27/33 (81%), Positives = 28/33 (84%)
 Frame = +3

Query: 156 MAQVLPIRFQEHLQLTNVGINPASISFNTLTME 254
           M Q LPIRFQEHLQLTNVGIN  S SF+TLTME
Sbjct: 1   MTQPLPIRFQEHLQLTNVGINANSFSFSTLTME 33


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,610,373
Number of Sequences: 53049
Number of extensions: 640237
Number of successful extensions: 1908
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1902
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2930645700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)