Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0843.Seq
         (674 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical pr...   103   9e-23
Z81066-4|CAB02972.2|  278|Caenorhabditis elegans Hypothetical pr...    34   0.081
Z75533-7|CAA99820.1|  285|Caenorhabditis elegans Hypothetical pr...    31   0.75 
U40951-4|AAG01568.1|  756|Caenorhabditis elegans Temporarily ass...    29   4.0  
AC024757-5|AAK68430.1|  814|Caenorhabditis elegans Hypothetical ...    27   9.2  

>Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical
           protein T20G5.1 protein.
          Length = 1681

 Score =  103 bits (248), Expect = 9e-23
 Identities = 50/85 (58%), Positives = 65/85 (76%)
 Frame = +2

Query: 254 TDKFICVREKVGETAEVVIIDMADPTNPIRRPISADSAIMNPASKVIALKGKAGVEAQKT 433
           +DK I VRE +G+  +VVIID+AD  NP RRPISADS IM+P +K++ALK      + KT
Sbjct: 32  SDKNIVVREMIGDQQQVVIIDLADTANPTRRPISADSVIMHPTAKILALK------SGKT 85

Query: 434 LQIFNIEMKSKMKAHTMTEDIVFWK 508
           LQIFNIE+K+K+KAH   ED+V+WK
Sbjct: 86  LQIFNIELKAKVKAHQNVEDVVYWK 110



 Score = 81.0 bits (191), Expect = 7e-16
 Identities = 35/54 (64%), Positives = 43/54 (79%)
 Frame = +1

Query: 511 ISLNTLALVTKMSVYHWSMEGDSTPVKMFDRHSSLADCQIINYRTDPKQQWLLL 672
           IS  T+ALV+  +VYHWS+EGD+ PVKMFDRH SLA  QIINYR D + +WL+L
Sbjct: 112 ISEKTIALVSDTAVYHWSIEGDAAPVKMFDRHQSLAGTQIINYRADAENKWLVL 165



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 18/41 (43%), Positives = 28/41 (68%)
 Frame = +3

Query: 168 LPIRFQEHLQLTNVGINPASISFNTLTMERTSLSVFARRLV 290
           LPI+F EHLQL N GI   +I+F+ +TME +  ++  R ++
Sbjct: 3   LPIKFHEHLQLPNAGIRVPNITFSNVTME-SDKNIVVREMI 42


>Z81066-4|CAB02972.2|  278|Caenorhabditis elegans Hypothetical
           protein F17B5.4 protein.
          Length = 278

 Score = 34.3 bits (75), Expect = 0.081
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -2

Query: 520 SVKSLPENNVFGHGVRLHFGFHLDIENLKCFLSFNTSFAFQSNDFTS-WIHDSR 362
           S+K+ P+NN+   G+R  F FH+  +NL C +   T +      F   W   SR
Sbjct: 17  SIKTAPKNNIIACGIRNSF-FHI-TQNLMCLVYNETQYLADKRSFNDPWTSSSR 68


>Z75533-7|CAA99820.1|  285|Caenorhabditis elegans Hypothetical
           protein C54G4.8 protein.
          Length = 285

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
 Frame = +2

Query: 176 TVSRTFTAYKCGNQSCFYF-FQHSHHGTDKFICVREKVGETAEVVIIDMADPTNPIRRPI 352
           +V R +  YK    +C    F H  H  D  +   E   E A+ +I D+ D    I+RP 
Sbjct: 62  SVRRGYEVYKQVCAACHSMKFLHYRHFVDTIMTEEEAKAEAADALINDVDDKGASIQRPG 121

Query: 353 SADSAIMNP 379
                + NP
Sbjct: 122 MLTDKLPNP 130


>U40951-4|AAG01568.1|  756|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 130 protein.
          Length = 756

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +2

Query: 383 SKVIALKGKAGVEAQKTLQIFNIEMKSKMKAHTMTEDIVFW 505
           S+++++K     +    ++ FN+ ++S MK    T  IVFW
Sbjct: 236 SEILSIKPNKPTKFPLRMKSFNVTIESSMKIFDYTIPIVFW 276


>AC024757-5|AAK68430.1|  814|Caenorhabditis elegans Hypothetical
           protein Y37E11AL.8 protein.
          Length = 814

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -2

Query: 319 HINNDNFCSLTNLLANTDKLVRSMVRVLKEIEAGLIPTFVSCKCS*NRI 173
           HI   N   L NLL  T  L+++    L++    L+P+ +SC  S N +
Sbjct: 323 HIGTRNIRGLANLLKLTWSLMKNPNIRLEKYLYVLVPSLISCVVSKNMV 371


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,934,712
Number of Sequences: 27780
Number of extensions: 342494
Number of successful extensions: 1023
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)