BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= pg--0843.Seq (674 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g08530.1 68416.m00990 clathrin heavy chain, putative similar ... 105 3e-23 At3g11130.1 68416.m01349 clathrin heavy chain, putative similar ... 101 6e-22 At2g03200.1 68415.m00273 aspartyl protease family protein contai... 30 1.6 At1g20360.1 68414.m02540 F-box protein-related contains weak hit... 29 3.8 At3g28040.1 68416.m03500 leucine-rich repeat transmembrane prote... 28 5.0 At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein b... 28 5.0 At4g15730.1 68417.m02394 expressed protein 28 6.6 At4g13920.1 68417.m02154 disease resistance family protein / LRR... 28 6.6 At3g17780.1 68416.m02268 expressed protein 28 6.6 >At3g08530.1 68416.m00990 clathrin heavy chain, putative similar to Swiss-Prot:Q00610 clathrin heavy chain 1 (CLH-17) [Homo sapiens] Length = 1703 Score = 105 bits (252), Expect = 3e-23 Identities = 54/111 (48%), Positives = 70/111 (63%) Frame = +2 Query: 176 TVSRTFTAYKCGNQSCFYFFQHSHHGTDKFICVREKVGETAEVVIIDMADPTNPIRRPIS 355 T+ T G F F + +DK+ICVRE + + VVIIDM P P+RRPI+ Sbjct: 9 TMKEVLTLPSIGINQQFITFTNVTMESDKYICVRETSPQNS-VVIIDMNMPMQPLRRPIT 67 Query: 356 ADSAIMNPASKVIALKGKAGVEAQKTLQIFNIEMKSKMKAHTMTEDIVFWK 508 ADSA+MNP SK++ALK + Q LQIFNIE K+K+K+H M E +VFWK Sbjct: 68 ADSALMNPNSKILALKAQVPGTTQDHLQIFNIEAKAKLKSHQMPEQVVFWK 118 Score = 76.6 bits (180), Expect = 1e-14 Identities = 34/58 (58%), Positives = 45/58 (77%) Frame = +1 Query: 499 FLEGISLNTLALVTKMSVYHWSMEGDSTPVKMFDRHSSLADCQIINYRTDPKQQWLLL 672 F + I+ L LVT+ SVYHWS+EGDS PVKMFDR ++LA+ QIINY+ P ++WL+L Sbjct: 116 FWKWITPKMLGLVTQNSVYHWSIEGDSEPVKMFDRTANLANNQIINYKCSPNEKWLVL 173 Score = 29.1 bits (62), Expect = 2.8 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = +3 Query: 171 PIRFQEHLQLTNVGINPASISFNTLTME 254 PI +E L L ++GIN I+F +TME Sbjct: 7 PITMKEVLTLPSIGINQQFITFTNVTME 34 >At3g11130.1 68416.m01349 clathrin heavy chain, putative similar to Swiss-Prot:Q00610 clathrin heavy chain 1 (CLH-17) [Homo sapiens] Length = 1705 Score = 101 bits (241), Expect = 6e-22 Identities = 49/95 (51%), Positives = 65/95 (68%) Frame = +2 Query: 224 FYFFQHSHHGTDKFICVREKVGETAEVVIIDMADPTNPIRRPISADSAIMNPASKVIALK 403 F F + +DK+ICVRE + + VVIIDM P P+RRPI+ADSA+MNP S+++ALK Sbjct: 25 FITFTNVTMESDKYICVRETAPQNS-VVIIDMNMPMQPLRRPITADSALMNPNSRILALK 83 Query: 404 GKAGVEAQKTLQIFNIEMKSKMKAHTMTEDIVFWK 508 + Q LQIFNIE K+K+K+H M E + FWK Sbjct: 84 AQVPGTTQDHLQIFNIEAKAKLKSHQMPEQVAFWK 118 Score = 77.0 bits (181), Expect = 1e-14 Identities = 34/58 (58%), Positives = 45/58 (77%) Frame = +1 Query: 499 FLEGISLNTLALVTKMSVYHWSMEGDSTPVKMFDRHSSLADCQIINYRTDPKQQWLLL 672 F + I+ L LVT+ SVYHWS+EGDS PVKMFDR ++LA+ QIINY+ P ++WL+L Sbjct: 116 FWKWITPKMLGLVTQTSVYHWSIEGDSEPVKMFDRTANLANNQIINYKCSPNEKWLVL 173 >At2g03200.1 68415.m00273 aspartyl protease family protein contains Pfam domain, PF00026: eukaryotic aspartyl protease Length = 461 Score = 29.9 bits (64), Expect = 1.6 Identities = 11/33 (33%), Positives = 21/33 (63%) Frame = +2 Query: 140 GVINKHGASITDTVSRTFTAYKCGNQSCFYFFQ 238 G++NK GAS+ V++T + + +Q FY+ + Sbjct: 276 GIVNKTGASLDGEVTKTMSLLRNPDQPSFYYLE 308 >At1g20360.1 68414.m02540 F-box protein-related contains weak hit to Pfam profile PF00646: F-box domain Length = 302 Score = 28.7 bits (61), Expect = 3.8 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Frame = -2 Query: 463 GFHLDIENLK--CFLSFNTSFAFQSNDFTSW-IHDSRVGTDWSSNWICWI 323 GF +D + K C L T + F+ ND SW + + + D S+ W+ Sbjct: 147 GFAVDRKRFKIVCILEMETRYEFEINDGDSWRLSKTTINADSKSDLTKWM 196 >At3g28040.1 68416.m03500 leucine-rich repeat transmembrane protein kinase, putative contains Pfam profiles: PF00560 leucine rich repeat, PF00069 eukaryotic protein kinase domain Length = 1016 Score = 28.3 bits (60), Expect = 5.0 Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 4/74 (5%) Frame = -2 Query: 469 HFGFHLD--IENLKCFLSFNTSFAFQSNDFTSWIHD--SRVGTDWSSNWICWICHINNDN 302 HF L ++ LK F+ S S DF WI D V D+SSN + + N Sbjct: 282 HFSGELPRTLQKLKSLNHFDVSNNLLSGDFPPWIGDMTGLVHLDFSSNELTGKLPSSISN 341 Query: 301 FCSLTNLLANTDKL 260 SL +L + +KL Sbjct: 342 LRSLKDLNLSENKL 355 >At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein binding region-containing protein similar to U4/U6 snRNP-associated 61 kDa protein [Homo sapiens] GI:18249847; contains Pfam profile PF01798: Putative snoRNA binding domain Length = 485 Score = 28.3 bits (60), Expect = 5.0 Identities = 10/27 (37%), Positives = 18/27 (66%) Frame = +2 Query: 245 HHGTDKFICVREKVGETAEVVIIDMAD 325 HH D + CV +K+G ++ ++D+AD Sbjct: 133 HHPID-YACVVKKIGNETDLALVDLAD 158 >At4g15730.1 68417.m02394 expressed protein Length = 1059 Score = 27.9 bits (59), Expect = 6.6 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%) Frame = +1 Query: 520 NTLALVTKMSVYHWSMEGDSTPV-KMFDRHSSLADCQIINYRTDPKQQWLL 669 N LA V K HW+ + TP + RH + D +N DPK++ L+ Sbjct: 611 NKLARVIKAEEIHWNQDPKWTPAERKRKRHDN--DFCTLNVERDPKKRLLV 659 >At4g13920.1 68417.m02154 disease resistance family protein / LRR family protein contains leucine rich-repeat domains Pfam:PF00560, INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780 Length = 891 Score = 27.9 bits (59), Expect = 6.6 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = +1 Query: 181 FKNIYSLQMWESILLLFLSTLSPWNGQVYLCSREG 285 FKN +S+ +S L+L L T + W CS G Sbjct: 37 FKNEFSIPSPDSDLMLILQTTAKWRNNTDCCSWGG 71 >At3g17780.1 68416.m02268 expressed protein Length = 129 Score = 27.9 bits (59), Expect = 6.6 Identities = 14/39 (35%), Positives = 22/39 (56%) Frame = +2 Query: 290 ETAEVVIIDMADPTNPIRRPISADSAIMNPASKVIALKG 406 E A VI+ + P +R +S S I+NPA+ ++A G Sbjct: 15 EVAIAVILTLPYPMLLKKRIVSLISLILNPAASIVAFAG 53 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,981,904 Number of Sequences: 28952 Number of extensions: 316483 Number of successful extensions: 919 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 890 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 917 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1432596384 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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