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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0843.Seq
         (674 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g08530.1 68416.m00990 clathrin heavy chain, putative similar ...   105   3e-23
At3g11130.1 68416.m01349 clathrin heavy chain, putative similar ...   101   6e-22
At2g03200.1 68415.m00273 aspartyl protease family protein contai...    30   1.6  
At1g20360.1 68414.m02540 F-box protein-related contains weak hit...    29   3.8  
At3g28040.1 68416.m03500 leucine-rich repeat transmembrane prote...    28   5.0  
At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein b...    28   5.0  
At4g15730.1 68417.m02394 expressed protein                             28   6.6  
At4g13920.1 68417.m02154 disease resistance family protein / LRR...    28   6.6  
At3g17780.1 68416.m02268 expressed protein                             28   6.6  

>At3g08530.1 68416.m00990 clathrin heavy chain, putative similar to
           Swiss-Prot:Q00610 clathrin heavy chain 1 (CLH-17) [Homo
           sapiens]
          Length = 1703

 Score =  105 bits (252), Expect = 3e-23
 Identities = 54/111 (48%), Positives = 70/111 (63%)
 Frame = +2

Query: 176 TVSRTFTAYKCGNQSCFYFFQHSHHGTDKFICVREKVGETAEVVIIDMADPTNPIRRPIS 355
           T+    T    G    F  F +    +DK+ICVRE   + + VVIIDM  P  P+RRPI+
Sbjct: 9   TMKEVLTLPSIGINQQFITFTNVTMESDKYICVRETSPQNS-VVIIDMNMPMQPLRRPIT 67

Query: 356 ADSAIMNPASKVIALKGKAGVEAQKTLQIFNIEMKSKMKAHTMTEDIVFWK 508
           ADSA+MNP SK++ALK +     Q  LQIFNIE K+K+K+H M E +VFWK
Sbjct: 68  ADSALMNPNSKILALKAQVPGTTQDHLQIFNIEAKAKLKSHQMPEQVVFWK 118



 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 34/58 (58%), Positives = 45/58 (77%)
 Frame = +1

Query: 499 FLEGISLNTLALVTKMSVYHWSMEGDSTPVKMFDRHSSLADCQIINYRTDPKQQWLLL 672
           F + I+   L LVT+ SVYHWS+EGDS PVKMFDR ++LA+ QIINY+  P ++WL+L
Sbjct: 116 FWKWITPKMLGLVTQNSVYHWSIEGDSEPVKMFDRTANLANNQIINYKCSPNEKWLVL 173



 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 171 PIRFQEHLQLTNVGINPASISFNTLTME 254
           PI  +E L L ++GIN   I+F  +TME
Sbjct: 7   PITMKEVLTLPSIGINQQFITFTNVTME 34


>At3g11130.1 68416.m01349 clathrin heavy chain, putative similar to
           Swiss-Prot:Q00610 clathrin heavy chain 1 (CLH-17) [Homo
           sapiens]
          Length = 1705

 Score =  101 bits (241), Expect = 6e-22
 Identities = 49/95 (51%), Positives = 65/95 (68%)
 Frame = +2

Query: 224 FYFFQHSHHGTDKFICVREKVGETAEVVIIDMADPTNPIRRPISADSAIMNPASKVIALK 403
           F  F +    +DK+ICVRE   + + VVIIDM  P  P+RRPI+ADSA+MNP S+++ALK
Sbjct: 25  FITFTNVTMESDKYICVRETAPQNS-VVIIDMNMPMQPLRRPITADSALMNPNSRILALK 83

Query: 404 GKAGVEAQKTLQIFNIEMKSKMKAHTMTEDIVFWK 508
            +     Q  LQIFNIE K+K+K+H M E + FWK
Sbjct: 84  AQVPGTTQDHLQIFNIEAKAKLKSHQMPEQVAFWK 118



 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 34/58 (58%), Positives = 45/58 (77%)
 Frame = +1

Query: 499 FLEGISLNTLALVTKMSVYHWSMEGDSTPVKMFDRHSSLADCQIINYRTDPKQQWLLL 672
           F + I+   L LVT+ SVYHWS+EGDS PVKMFDR ++LA+ QIINY+  P ++WL+L
Sbjct: 116 FWKWITPKMLGLVTQTSVYHWSIEGDSEPVKMFDRTANLANNQIINYKCSPNEKWLVL 173


>At2g03200.1 68415.m00273 aspartyl protease family protein contains
           Pfam domain, PF00026: eukaryotic aspartyl protease
          Length = 461

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +2

Query: 140 GVINKHGASITDTVSRTFTAYKCGNQSCFYFFQ 238
           G++NK GAS+   V++T +  +  +Q  FY+ +
Sbjct: 276 GIVNKTGASLDGEVTKTMSLLRNPDQPSFYYLE 308


>At1g20360.1 68414.m02540 F-box protein-related contains weak hit to
           Pfam profile PF00646: F-box domain
          Length = 302

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = -2

Query: 463 GFHLDIENLK--CFLSFNTSFAFQSNDFTSW-IHDSRVGTDWSSNWICWI 323
           GF +D +  K  C L   T + F+ ND  SW +  + +  D  S+   W+
Sbjct: 147 GFAVDRKRFKIVCILEMETRYEFEINDGDSWRLSKTTINADSKSDLTKWM 196


>At3g28040.1 68416.m03500 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profiles: PF00560 leucine
           rich repeat, PF00069 eukaryotic protein kinase domain
          Length = 1016

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
 Frame = -2

Query: 469 HFGFHLD--IENLKCFLSFNTSFAFQSNDFTSWIHD--SRVGTDWSSNWICWICHINNDN 302
           HF   L   ++ LK    F+ S    S DF  WI D    V  D+SSN +      +  N
Sbjct: 282 HFSGELPRTLQKLKSLNHFDVSNNLLSGDFPPWIGDMTGLVHLDFSSNELTGKLPSSISN 341

Query: 301 FCSLTNLLANTDKL 260
             SL +L  + +KL
Sbjct: 342 LRSLKDLNLSENKL 355


>At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein
           binding region-containing protein similar to U4/U6
           snRNP-associated 61 kDa protein [Homo sapiens]
           GI:18249847; contains Pfam profile PF01798: Putative
           snoRNA binding domain
          Length = 485

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 245 HHGTDKFICVREKVGETAEVVIIDMAD 325
           HH  D + CV +K+G   ++ ++D+AD
Sbjct: 133 HHPID-YACVVKKIGNETDLALVDLAD 158


>At4g15730.1 68417.m02394 expressed protein
          Length = 1059

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +1

Query: 520 NTLALVTKMSVYHWSMEGDSTPV-KMFDRHSSLADCQIINYRTDPKQQWLL 669
           N LA V K    HW+ +   TP  +   RH +  D   +N   DPK++ L+
Sbjct: 611 NKLARVIKAEEIHWNQDPKWTPAERKRKRHDN--DFCTLNVERDPKKRLLV 659


>At4g13920.1 68417.m02154 disease resistance family protein / LRR
           family protein contains leucine rich-repeat domains
           Pfam:PF00560, INTERPRO:IPR001611; similar to Cf-2.2
           [Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 891

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 181 FKNIYSLQMWESILLLFLSTLSPWNGQVYLCSREG 285
           FKN +S+   +S L+L L T + W      CS  G
Sbjct: 37  FKNEFSIPSPDSDLMLILQTTAKWRNNTDCCSWGG 71


>At3g17780.1 68416.m02268 expressed protein
          Length = 129

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 290 ETAEVVIIDMADPTNPIRRPISADSAIMNPASKVIALKG 406
           E A  VI+ +  P    +R +S  S I+NPA+ ++A  G
Sbjct: 15  EVAIAVILTLPYPMLLKKRIVSLISLILNPAASIVAFAG 53


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,981,904
Number of Sequences: 28952
Number of extensions: 316483
Number of successful extensions: 919
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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