Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0842.Seq
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|c...    27   3.6  
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po...    27   3.6  
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    26   4.7  
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos...    26   4.7  
SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa...    26   6.3  
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy...    25   8.3  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    25   8.3  

>SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 287 VEKSMPSIYMPPEEMYSETRQYVLRRADSV 376
           + +S+P++  PP + +SET  Y     DS+
Sbjct: 227 IHESLPALQNPPIQSHSETDLYADEELDSI 256


>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 330

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 283 IQRLAKELVHCTIGVSRS*TAGSASCM 203
           + + AK LVHC  G+SRS T  +A  M
Sbjct: 121 LSKNAKVLVHCFAGISRSVTLVAAYLM 147


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +3

Query: 144 ESNPLFRWSMSLGEKSLATGIQLALPAVQLLET--PIV 251
           ES  +F W   +GE+     IQ +L A+QLLE   P+V
Sbjct: 431 ESFMMFVWKKKIGEELKKWIIQDSLKALQLLEAWDPVV 468


>SPBC409.12c |||nuclear telomere cap complex subunit
           Stn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 87  IPIVVSGIGVTEKLYFKIRESNPLF 161
           IP++ SG+    K+   +R+SNP+F
Sbjct: 263 IPLMASGLLEAHKVQSIVRDSNPMF 287


>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 144

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 445 AHHRRQIRRQVPPARQPRCSRLTSADA 525
           A H+RQ+R   P A +P      SADA
Sbjct: 89  ATHKRQVRPTAPRAGRPEPRERASADA 115


>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 354

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 523 AVDGPEGETGRARAAQAVQHGARFKRKLQRRLT 621
           ++ GPEGE   A+ A  V  G+    K  ++ T
Sbjct: 288 SLGGPEGEVRNAKLADLVMRGSSHGNKTSQKST 320


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 551 PVSPSGPSTASALVSRLHLGCLAGGTCRRI 462
           PV+  GP T+ AL+      C A G C RI
Sbjct: 12  PVNFVGPVTSLALIHNDKFLCCAQGPCLRI 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,062,000
Number of Sequences: 5004
Number of extensions: 64548
Number of successful extensions: 216
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)