Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0842.Seq
(724 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0885 + 22268287-22268988 31 1.2
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26... 31 1.2
10_08_0844 - 20963774-20963792,20964111-20964256,20964787-209649... 30 2.1
06_01_0768 + 5742938-5743196,5743291-5744729 30 2.1
01_01_0161 - 1385408-1385566,1385815-1385943,1386164-1386322,138... 30 2.1
12_02_0871 + 23865343-23866016,23866122-23866170,23866276-238663... 29 2.8
04_04_0675 + 27183826-27184443 29 2.8
04_03_0368 + 15004949-15005659,15005789-15005848 29 2.8
01_02_0099 + 11092529-11093140,11094153-11094424,11095378-110954... 29 2.8
11_03_0151 - 10816905-10816977,10817090-10817421,10817884-108179... 29 3.7
08_02_1136 - 24614236-24615207 29 3.7
02_05_0690 - 30943184-30943305,30944048-30944459,30944549-309446... 29 3.7
10_07_0120 + 13076748-13076955,13077060-13077370 29 4.9
04_04_1527 - 34167673-34168245 29 4.9
02_05_0880 + 32466538-32467083,32467333-32467644,32467731-324682... 29 4.9
11_01_0219 - 1710206-1710246,1710479-1710620,1710699-1710752,171... 28 6.5
10_08_1013 - 22239396-22239536,22240629-22240715,22240787-22241131 28 6.5
06_03_0220 + 18276641-18276915,18278445-18278676 28 6.5
11_03_0206 + 11655132-11655232,11655433-11655823 28 8.6
04_04_0890 + 29122442-29122805,29122965-29123119,29123238-291233... 28 8.6
02_05_0498 - 29520062-29520758,29521552-29521860,29523525-29524735 28 8.6
>08_02_0885 + 22268287-22268988
Length = 233
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +2
Query: 536 LKGRRAGPGQPRRCSTEPGSRGSC--RGDSPGKLWPK 640
+KG+ A P PRRC GS +C R + P + W K
Sbjct: 51 VKGKTAIPATPRRCRRPDGSNPACKMRWERPPEGWMK 87
>06_01_0026 +
265755-265968,267319-267468,267694-267738,267786-268460,
268779-268843,268854-269073,269163-269438,269547-269663,
269776-269853,269930-270184,270235-270323,270403-270816
Length = 865
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 185 EVPSDRHTASTPGGSAPGNSDRTMDKFLCKSL-DVVEKSMPSIYMPPEEMYSETR 346
E P HT TPG P D KF+ + +V+K I +PPE + S+TR
Sbjct: 588 ETPPASHTFPTPGVKIP---DANPAKFIPDVVRPMVDKPSRGIVIPPEAVESQTR 639
>10_08_0844 -
20963774-20963792,20964111-20964256,20964787-20964962,
20965061-20965216,20965287-20967102
Length = 770
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/64 (28%), Positives = 27/64 (42%)
Frame = +1
Query: 433 PRPCAHHRRQIRRQVPPARQPRCSRLTSADAVDGPEGETGRARAAQAVQHGARFKRKLQR 612
P P R R +PP+R+P +RL + P + AA+ HG +L R
Sbjct: 11 PFPFPSASRPPPRLLPPSRRPPAARLAATRRFRPPTADDEPPEAAEDSSHGLNRYDQLTR 70
Query: 613 RLTR 624
+ R
Sbjct: 71 HVER 74
>06_01_0768 + 5742938-5743196,5743291-5744729
Length = 565
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/49 (36%), Positives = 21/49 (42%)
Frame = -3
Query: 185 LTQGHRPTKERVGLPYFEVQFFCHSNTGHDDRYGCNP*DHFKIRHGWLI 39
L Q RP LPY V H T HD + C+ HF R WL+
Sbjct: 249 LVQSDRPATSVSELPYVFVDLD-HGCTYHDKLFYCDDERHFLHRAPWLL 296
>01_01_0161 - 1385408-1385566,1385815-1385943,1386164-1386322,
1387228-1387571,1387641-1387905,1387998-1388075,
1388207-1388260,1389341-1389361,1389453-1389578,
1389696-1389863,1389923-1390313,1390629-1390710,
1391175-1391536,1391806-1392630,1392956-1393476
Length = 1227
Score = 29.9 bits (64), Expect = 2.1
Identities = 24/68 (35%), Positives = 29/68 (42%)
Frame = +2
Query: 179 G*EVPSDRHTASTPGGSAPGNSDRTMDKFLCKSLDVVEKSMPSIYMPPEEMYSETRQYVL 358
G VP DR T S A G DRT + LC ++ V+ P SE+R L
Sbjct: 1056 GHAVPPDRLTYSQGHVRAQGRRDRTY-RTLCNYIEWVDTENPQNDGTRPYARSESRSDYL 1114
Query: 359 RRADSVTR 382
RR D R
Sbjct: 1115 RRKDEHER 1122
>12_02_0871 +
23865343-23866016,23866122-23866170,23866276-23866356,
23866599-23866718,23866957-23867055,23867135-23867194,
23867316-23867410,23867483-23867508,23869212-23869285,
23870194-23870259,23871027-23871099,23871585-23871622,
23873758-23873871,23876079-23876195,23876288-23876368,
23876468-23876536,23876631-23876669,23876809-23876973,
23877380-23877484,23877569-23877637,23877754-23877816,
23877903-23878021,23878124-23878348,23878409-23878610
Length = 940
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 454 RRQIRRQVPPARQPRCSRLTSAD 522
RR I R PP RQ RCS + S++
Sbjct: 225 RRSIARDEPPRRQKRCSSICSSE 247
>04_04_0675 + 27183826-27184443
Length = 205
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 436 RPCAHHRRQIRRQVPPARQPRCSRLTSADAVDGP 537
R C H ++RR++ R+ C L + D +DGP
Sbjct: 64 RQCRHKVEKLRRRLRSKRRRPCPLLDAIDLLDGP 97
>04_03_0368 + 15004949-15005659,15005789-15005848
Length = 256
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -3
Query: 485 AGGTCRRICRRW*AHGRGRSRWPPSSANP 399
AGG RR R HGRG +RW + P
Sbjct: 74 AGGEARRRSGRQIRHGRGEARWRTTDLEP 102
>01_02_0099 +
11092529-11093140,11094153-11094424,11095378-11095438,
11095553-11095622,11095645-11095901,11096466-11096639
Length = 481
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/87 (20%), Positives = 39/87 (44%)
Frame = +3
Query: 99 VSGIGVTEKLYFKIRESNPLFRWSMSLGEKSLATGIQLALPAVQLLETPIVQWTSSFASR 278
+SG + + + E P + ++ + + S++ G+Q + L E P+V T++ +
Sbjct: 110 ISGCPLLSDFRWSLPEVEP-YPANLFMADSSMSCGVQATAKKLDL-EAPVVATTATSDNN 167
Query: 279 WMWSRRVCLQFICLQRRCTQRRVNTCS 359
++C Q C +R + CS
Sbjct: 168 GHSELQLCSQMWCGRRETRRHEFRRCS 194
>11_03_0151 -
10816905-10816977,10817090-10817421,10817884-10817967,
10818045-10818092,10818233-10818287,10818378-10818433,
10818543-10818627,10819810-10819844
Length = 255
Score = 29.1 bits (62), Expect = 3.7
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = -2
Query: 297 LFSTTSSDLQ-RNLSIVRSEFPGAEPPGVLAVCRSLGTSHPGT*TNEREG-WTPLF 136
L+ST L +N + EF P G L +CR L TS +EG +TPLF
Sbjct: 185 LYSTIDFFLPAKNPQLKSLEFLHLAPEGSLRICRFLATSVDSLVKGGKEGIFTPLF 240
>08_02_1136 - 24614236-24615207
Length = 323
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/36 (44%), Positives = 17/36 (47%)
Frame = -2
Query: 639 FGQSLPGESPLQLPLEPGSVLHRLGCPGPARLPFRP 532
FG + P SP P E G VLH G P P F P
Sbjct: 228 FGTTSPAPSPPP-PQERGGVLHNAGEPQPQHTVFDP 262
>02_05_0690 -
30943184-30943305,30944048-30944459,30944549-30944610,
30944724-30944787,30944880-30944947,30945039-30945168,
30945276-30945341,30945794-30946369
Length = 499
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +3
Query: 69 VSRVASIPIVVSGIGVTEKLYFKIRESNPLFRWSMSLGEKSLATGIQLALP 221
V R+ I V+S + +K+ + P FRW S G+ G+ +A+P
Sbjct: 304 VRRLYDIANVLSSLNFIDKIQ-QADSRKPAFRWLGSAGKPKAENGVTIAVP 353
>10_07_0120 + 13076748-13076955,13077060-13077370
Length = 172
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -3
Query: 440 GRGRSRWPPSSANPRQLCLVAS 375
GRGR RW PS+A CL A+
Sbjct: 4 GRGRRRWCPSTARTGTACLSAA 25
>04_04_1527 - 34167673-34168245
Length = 190
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +1
Query: 433 PRPCAHHRRQIRRQVPPARQPRCSRLTSADAVDGPEGETGRARAA 567
P P H + PP P CS ++ ++ GP G A AA
Sbjct: 79 PSPHYHLPGKAAAAAPPVAGPACSASSTVESSSGPRGPRPAATAA 123
>02_05_0880 +
32466538-32467083,32467333-32467644,32467731-32468201,
32468481-32469246,32469332-32469774
Length = 845
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 542 GRRAGPGQPRRCSTEPGSRGSCRGDSPGKLWPKPRLS 652
G GPG+ +R +T+P +RG RG+ P+P S
Sbjct: 118 GHGGGPGRGKRSATQPSARGG-RGNKVPYKPPRPSSS 153
>11_01_0219 -
1710206-1710246,1710479-1710620,1710699-1710752,
1710838-1710909,1711631-1711699,1711807-1711848,
1711946-1712014,1712130-1712267,1712390-1712500,
1712576-1712726,1713720-1713775,1714076-1714753
Length = 540
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +1
Query: 448 HHRRQIRR--QVPPARQPRCSRLTSADAVDGPEGE 546
H RRQ+RR Q PP++ P + SADA + E E
Sbjct: 90 HLRRQLRRLEQQPPSQPPPRTESKSADAEEKSEEE 124
>10_08_1013 - 22239396-22239536,22240629-22240715,22240787-22241131
Length = 190
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = +2
Query: 566 PRRCSTEPGSRGSCRGDSPGKLWPKPRLSKNKST 667
P CS+ G +G C K W R ++ K T
Sbjct: 153 PAPCSSWKGEKGHCHASDKDKKWKVKRTARQKRT 186
>06_03_0220 + 18276641-18276915,18278445-18278676
Length = 168
Score = 28.3 bits (60), Expect = 6.5
Identities = 27/89 (30%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
Frame = +1
Query: 385 RHSCLGFADDGGHRDRPRPCAHHRRQIRRQVPPARQPRCSRLTSADA---VDGPEGETGR 555
R +CL + G R P P AH R A P C L+ ADA P E +
Sbjct: 24 RGNCLRWIRVGDGRPPPLPVAHRR---------AHTPWCPPLSVADARMPPRPPPSEAVQ 74
Query: 556 ARAAQAVQHGARFKRKLQRRLTRQALAEA 642
AA + G +R+ + R +R +EA
Sbjct: 75 PAAAGRARAGRAQERRERSRCSRPPFSEA 103
>11_03_0206 + 11655132-11655232,11655433-11655823
Length = 163
Score = 27.9 bits (59), Expect = 8.6
Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Frame = +1
Query: 337 RDASIRAPTC-GFCDATRHSCLGFADDGGHRDRPRPCAHHRRQIRRQVP--PARQPRCSR 507
R S C G + H+C DG + PRP H Q R P P QP R
Sbjct: 47 RGCSASITLCLGLPSSRAHACRA-VPDGQNPPNPRPALHSISQSSRSFPPRPCLQPPWGR 105
Query: 508 LTSADA 525
L + A
Sbjct: 106 LCLSHA 111
>04_04_0890 +
29122442-29122805,29122965-29123119,29123238-29123304,
29123401-29123452,29124047-29124099,29126158-29126513,
29126633-29126713
Length = 375
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +1
Query: 433 PRPCAHHRRQIRRQVPPARQPRCSRLTSADAVDGPEGETG 552
PRPC H R + Q+ A + + SR ++ G G
Sbjct: 227 PRPCDHTRSDQQTQIESAERKKMSRACRGESSGGGRSSLG 266
>02_05_0498 - 29520062-29520758,29521552-29521860,29523525-29524735
Length = 738
Score = 27.9 bits (59), Expect = 8.6
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +2
Query: 521 MRWTGLKGRR-AGPGQPRRCSTEPGSRGSCRGD--SPGKLWPKPRLS 652
+R L+G R AG G+P S R R D SPG++WP R S
Sbjct: 581 LRRRRLEGERGAGGGRPALTSPASRRRRCPRPDPASPGRIWPPRRHS 627
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,150,019
Number of Sequences: 37544
Number of extensions: 530656
Number of successful extensions: 2021
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2020
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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