Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0842.Seq
(724 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50433| Best HMM Match : MFAP1_C (HMM E-Value=0.24) 35 0.058
SB_3164| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_37672| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_23345| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71) 29 5.0
SB_28994| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_28258| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_59217| Best HMM Match : TRAUB (HMM E-Value=0.25) 28 8.8
SB_40106| Best HMM Match : DUF701 (HMM E-Value=3.6) 28 8.8
SB_1960| Best HMM Match : Transposase_21 (HMM E-Value=8.1e-05) 28 8.8
>SB_50433| Best HMM Match : MFAP1_C (HMM E-Value=0.24)
Length = 536
Score = 35.1 bits (77), Expect = 0.058
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = +3
Query: 33 KTNQPAMPNLEVVSRVASIPIVVSGIGVTEKLYFKIRESNPLFRWSMSLGEKSLATGIQL 212
+T QP++ + V + IP+V + + Y RE N L + S + E S T I+
Sbjct: 16 ETLQPSLQEQDFVRKAGDIPVVKTAVEKITSFYHSARERNHLTKVSFAAAELSFWTAIKT 75
Query: 213 ALPAVQLL 236
+ A LL
Sbjct: 76 SQFAYSLL 83
>SB_3164| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 623
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -2
Query: 648 SLGFGQSLPGESPLQLPLEPGSVLHRLGCPGPARLP 541
SL Q+ ++ L +PL P + L+ + PGP R+P
Sbjct: 112 SLSEDQTKVSQTSLSMPLSPNATLNPMKHPGPRRIP 147
>SB_37672| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 343
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 545 RRAGPGQPRRCSTEPGSRGSCR 610
RRAGP QPR+ + P +RG+ R
Sbjct: 251 RRAGPRQPRQHAQAPDNRGNTR 272
>SB_23345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 903
Score = 28.7 bits (61), Expect = 5.0
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Frame = +1
Query: 409 DDGGHRDRPRPCAHHRRQI--RRQVPPARQPRCSRLTSADAVDGPEGETGRARAAQAVQH 582
+DGG R A R ++ +RQ A + S T+++ +G E + R RAA++ Q
Sbjct: 646 EDGGDDSFARRRAERRARLERKRQEAEAEKNGTSISTTSETTNGDESRSARRRAARSHQE 705
Query: 583 GARFKRKLQRRLTRQALAEAK 645
+ + ++ A +A+
Sbjct: 706 DSTTSEEESQQSNYTASVKAR 726
>SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71)
Length = 1281
Score = 28.7 bits (61), Expect = 5.0
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = +1
Query: 457 RQIRRQVPPARQPRCSRLTSADAVDGPEGETGRARAAQAVQHGARFK-RKLQRRLTRQAL 633
RQ+ Q ARQ R TS + GR RA QA ++ + + Q RQA
Sbjct: 878 RQLEEQAARARQARSKTKTSTTSKPQDNQAAGRTRAGQAKSKTSKPQDQDKQAARPRQAS 937
Query: 634 AEAKAIKEQ 660
+ K K Q
Sbjct: 938 HKTKRSKPQ 946
>SB_28994| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 422
Score = 28.3 bits (60), Expect = 6.7
Identities = 22/66 (33%), Positives = 32/66 (48%)
Frame = +1
Query: 469 RQVPPARQPRCSRLTSADAVDGPEGETGRARAAQAVQHGARFKRKLQRRLTRQALAEAKA 648
RQ + +PR S L + G + E RAR A +Q +R+ Q L+RQ L E +
Sbjct: 114 RQSRTSTKPRASSLRMEEGYPGRQEEEMRAREALMIQS----RREAQ--LSRQRLEEERL 167
Query: 649 IKEQIH 666
+Q H
Sbjct: 168 KSKQKH 173
>SB_28258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1234
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 716 QANTGSFATNSATYTKTWICSLIALASA 633
Q+N G+ A N T T+TW+ LIA + +
Sbjct: 7 QSNPGNGAHNRLTVTQTWVTVLIACSQS 34
>SB_59217| Best HMM Match : TRAUB (HMM E-Value=0.25)
Length = 626
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +3
Query: 27 MTKTNQPAMPNLEVVSRVASIPIVVSGIGVTEKLYFKIRESNPLFRWSMSLGEKSL 194
+TK + + P + V SR+ + + + +T+K KI + P+ S+ LG K L
Sbjct: 140 LTKLKKGSSPVIGVASRLGNKKEIDANGELTDKELAKIETAKPMTSASLKLGNKLL 195
>SB_40106| Best HMM Match : DUF701 (HMM E-Value=3.6)
Length = 69
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -2
Query: 615 SPLQLPLEPGSVLHRLGCPGPARLPFRPVHRIGAGQSAASWLS 487
S L P++ + R+ CP RLPF V GQ+ +L+
Sbjct: 10 SRLSCPVDKHFLFSRVSCPVDKRLPFSSVSYRSRGQALTFFLA 52
>SB_1960| Best HMM Match : Transposase_21 (HMM E-Value=8.1e-05)
Length = 350
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 359 GARIDASLSTSPLEAYKLKAYSSRPHPATC 270
G ++ SLST P + YK+K +SR C
Sbjct: 160 GKQVSQSLSTGPSQHYKIKMAASRKFCVEC 189
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,650,029
Number of Sequences: 59808
Number of extensions: 569445
Number of successful extensions: 1800
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1800
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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