Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0842.Seq
(724 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF055574-1|AAD11622.1| 434|Homo sapiens placental protein 17b1 ... 32 2.4
BT007235-1|AAP35899.1| 434|Homo sapiens cargo selection protein... 31 3.2
BC019278-1|AAH19278.1| 434|Homo sapiens mannose-6-phosphate rec... 31 3.2
BC005818-1|AAH05818.1| 434|Homo sapiens mannose-6-phosphate rec... 31 3.2
AK223054-1|BAD96774.1| 433|Homo sapiens mannose 6 phosphate rec... 31 3.2
BC029054-1|AAH29054.1| 511|Homo sapiens PDZK7 protein protein. 31 4.2
BC007566-1|AAH07566.1| 434|Homo sapiens mannose-6-phosphate rec... 31 4.2
BC001590-1|AAH01590.1| 434|Homo sapiens mannose-6-phosphate rec... 31 4.2
AL133215-20|CAI10934.1| 517|Homo sapiens novel protein protein. 31 4.2
AK026862-1|BAB15577.1| 517|Homo sapiens protein ( Homo sapiens ... 31 4.2
AF057140-1|AAC39751.1| 434|Homo sapiens cargo selection protein... 31 4.2
U32169-2|AAC50213.1| 1650|Homo sapiens Pro-a2(XI) protein. 31 5.5
L18987-1|AAA35498.1| 663|Homo sapiens alpha-2 type XI collagen ... 31 5.5
BX248309-1|CAM26005.1| 1622|Homo sapiens collagen, type XI, alph... 31 5.5
AL845446-3|CAI95551.1| 1650|Homo sapiens collagen, type XI, alph... 31 5.5
AL844527-6|CAI41834.1| 1650|Homo sapiens collagen, type XI, alph... 31 5.5
AL662824-16|CAI17611.2| 1650|Homo sapiens collagen, type XI, alp... 31 5.5
AL645940-2|CAI18063.2| 1650|Homo sapiens collagen type XI alpha ... 31 5.5
AL590709-1|CAI40737.1| 173|Homo sapiens syntaxin binding protei... 31 5.5
AL355365-1|CAI40420.1| 173|Homo sapiens syntaxin binding protei... 31 5.5
AL031228-15|CAI95623.1| 1650|Homo sapiens collagen type XI alpha... 31 5.5
BC028150-1|AAH28150.1| 467|Homo sapiens sialic acid binding Ig-... 30 7.3
AY040543-1|AAK83656.1| 467|Homo sapiens sialic acid binding imm... 30 7.3
AJ130711-1|CAB51127.1| 374|Homo sapiens QA79 membrane protein, ... 30 7.3
AJ130710-1|CAB51126.1| 467|Homo sapiens QA79 membrane protein, ... 30 7.3
AJ007395-1|CAB46011.1| 467|Homo sapiens QA79 membrane protein p... 30 7.3
AF193441-1|AAF06790.1| 374|Homo sapiens Siglec-7 protein. 30 7.3
AF178981-1|AAF44346.1| 316|Homo sapiens D-siglec precursor prot... 30 7.3
AF170485-1|AAF12759.1| 467|Homo sapiens sialic acid binding Ig-... 30 7.3
>AF055574-1|AAD11622.1| 434|Homo sapiens placental protein 17b1
protein.
Length = 434
Score = 31.9 bits (69), Expect = 2.4
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Frame = +3
Query: 66 VVSRVASIPIVVSGIGVTEKLYFKIRESNPLFRWSMSLGEKSL----ATGIQLALPAVQL 233
VV RVAS+P++ S + Y +ES P + EK + A + A P +
Sbjct: 25 VVDRVASMPLISSTCDMVSAAYASTKESYPHVKTVCDAAEKGVRTLTAAAVSWAQPILSK 84
Query: 234 LETPIVQWTSSFASR 278
LE P + S +A R
Sbjct: 85 LE-PQIASASEYAHR 98
>BT007235-1|AAP35899.1| 434|Homo sapiens cargo selection protein
(mannose 6 phosphate receptor binding protein) protein.
Length = 434
Score = 31.5 bits (68), Expect = 3.2
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Frame = +3
Query: 66 VVSRVASIPIVVSGIGVTEKLYFKIRESNPLFRWSMSLGEKSL----ATGIQLALPAVQL 233
VV RVAS+P++ S + Y +ES P + EK + A + A P +
Sbjct: 25 VVDRVASMPLISSTCDMVSAAYASTKESYPHIKTVCDAAEKGVRTLTAAAVSGAQPILSK 84
Query: 234 LETPIVQWTSSFASR 278
LE P + S +A R
Sbjct: 85 LE-PQIASASEYAHR 98
>BC019278-1|AAH19278.1| 434|Homo sapiens mannose-6-phosphate
receptor binding protein 1 protein.
Length = 434
Score = 31.5 bits (68), Expect = 3.2
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Frame = +3
Query: 66 VVSRVASIPIVVSGIGVTEKLYFKIRESNPLFRWSMSLGEKSL----ATGIQLALPAVQL 233
VV RVAS+P++ S + Y +ES P + EK + A + A P +
Sbjct: 25 VVDRVASMPLISSTCDMVSAAYASTKESYPHIKTVCDAAEKGVRTLTAAAVSGAQPILSK 84
Query: 234 LETPIVQWTSSFASR 278
LE P + S +A R
Sbjct: 85 LE-PQIASASEYAHR 98
>BC005818-1|AAH05818.1| 434|Homo sapiens mannose-6-phosphate
receptor binding protein 1 protein.
Length = 434
Score = 31.5 bits (68), Expect = 3.2
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Frame = +3
Query: 66 VVSRVASIPIVVSGIGVTEKLYFKIRESNPLFRWSMSLGEKSL----ATGIQLALPAVQL 233
VV RVAS+P++ S + Y +ES P + EK + A + A P +
Sbjct: 25 VVDRVASMPLISSTCDMVSAAYASTKESYPHIKTVCDAAEKGVRTLTAAAVSGAQPILSK 84
Query: 234 LETPIVQWTSSFASR 278
LE P + S +A R
Sbjct: 85 LE-PQIASASEYAHR 98
>AK223054-1|BAD96774.1| 433|Homo sapiens mannose 6 phosphate
receptor binding protein 1 variant protein.
Length = 433
Score = 31.5 bits (68), Expect = 3.2
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Frame = +3
Query: 66 VVSRVASIPIVVSGIGVTEKLYFKIRESNPLFRWSMSLGEKSL----ATGIQLALPAVQL 233
VV RVAS+P++ S + Y +ES P + EK + A + A P +
Sbjct: 25 VVDRVASMPLISSTCDMVSAAYASTKESYPHIKTVCDAAEKGVRTLTAAAVSGAQPILSK 84
Query: 234 LETPIVQWTSSFASR 278
LE P + S +A R
Sbjct: 85 LE-PQIASASEYAHR 98
>BC029054-1|AAH29054.1| 511|Homo sapiens PDZK7 protein protein.
Length = 511
Score = 31.1 bits (67), Expect = 4.2
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -3
Query: 383 VASQNPHVGARIDASLSTSPLEAYKLKAYSSRPHP 279
+ S PH G R+D++LS SP A L SRP P
Sbjct: 397 IRSDGPHPGRRLDSALSESPKTALLLAL--SRPRP 429
>BC007566-1|AAH07566.1| 434|Homo sapiens mannose-6-phosphate
receptor binding protein 1 protein.
Length = 434
Score = 31.1 bits (67), Expect = 4.2
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Frame = +3
Query: 66 VVSRVASIPIVVSGIGVTEKLYFKIRESNPLFRWSMSLGEKSL----ATGIQLALPAVQL 233
VV RVAS+P++ S + Y +ES P + EK + A + A P +
Sbjct: 25 VVDRVASMPLISSTCDMVSAAYASTKESYPHVKTVCDAAEKGVRTLTAAAVSGAQPILSK 84
Query: 234 LETPIVQWTSSFASR 278
LE P + S +A R
Sbjct: 85 LE-PQIASASEYAHR 98
>BC001590-1|AAH01590.1| 434|Homo sapiens mannose-6-phosphate
receptor binding protein 1 protein.
Length = 434
Score = 31.1 bits (67), Expect = 4.2
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Frame = +3
Query: 66 VVSRVASIPIVVSGIGVTEKLYFKIRESNPLFRWSMSLGEKSL----ATGIQLALPAVQL 233
VV RVAS+P++ S + Y +ES P + EK + A + A P +
Sbjct: 25 VVDRVASMPLISSTCDMVSAAYASTKESYPHVKTVCDAAEKGVRTLTAAAVSGAQPILSK 84
Query: 234 LETPIVQWTSSFASR 278
LE P + S +A R
Sbjct: 85 LE-PQIASASEYAHR 98
>AL133215-20|CAI10934.1| 517|Homo sapiens novel protein protein.
Length = 517
Score = 31.1 bits (67), Expect = 4.2
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -3
Query: 383 VASQNPHVGARIDASLSTSPLEAYKLKAYSSRPHP 279
+ S PH G R+D++LS SP A L SRP P
Sbjct: 397 IRSDGPHPGRRLDSALSESPKTALLLAL--SRPRP 429
>AK026862-1|BAB15577.1| 517|Homo sapiens protein ( Homo sapiens
cDNA: FLJ23209 fis, clone ADSH00512. ).
Length = 517
Score = 31.1 bits (67), Expect = 4.2
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -3
Query: 383 VASQNPHVGARIDASLSTSPLEAYKLKAYSSRPHP 279
+ S PH G R+D++LS SP A L SRP P
Sbjct: 397 IRSDGPHPGRRLDSALSESPKTALLLAL--SRPRP 429
>AF057140-1|AAC39751.1| 434|Homo sapiens cargo selection protein
TIP47 protein.
Length = 434
Score = 31.1 bits (67), Expect = 4.2
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Frame = +3
Query: 66 VVSRVASIPIVVSGIGVTEKLYFKIRESNPLFRWSMSLGEKSL----ATGIQLALPAVQL 233
VV RVAS+P++ S + Y +ES P + EK + A + A P +
Sbjct: 25 VVDRVASMPLISSTCDMVSAAYASTKESYPHVKTVCDAAEKGVRTLTAAAVSGAQPILSK 84
Query: 234 LETPIVQWTSSFASR 278
LE P + S +A R
Sbjct: 85 LE-PQIASASEYAHR 98
>U32169-2|AAC50213.1| 1650|Homo sapiens Pro-a2(XI) protein.
Length = 1650
Score = 30.7 bits (66), Expect = 5.5
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Frame = +1
Query: 412 DGGHRDRPRPCAHHRRQIRRQVPPAR--QPRCSRLTSADAVDGPEGETGRARAAQAVQHG 585
+GG R+RP+ HR Q Q P+R +P+ S D G E E + ++
Sbjct: 229 EGGQRERPQNQQPHRAQRSPQQQPSRLHRPQNQEPQSQDPTPGEEEEILESSLLPPLEEA 288
Query: 586 ARFKRKLQRRLTRQALAEAKAIKE 657
A R L+ A+ E + E
Sbjct: 289 AHGPRGLKGEKGEPAVLEPGMLVE 312
>L18987-1|AAA35498.1| 663|Homo sapiens alpha-2 type XI collagen
protein.
Length = 663
Score = 30.7 bits (66), Expect = 5.5
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Frame = +1
Query: 412 DGGHRDRPRPCAHHRRQIRRQVPPAR--QPRCSRLTSADAVDGPEGETGRARAAQAVQHG 585
+GG R+RP+ HR Q Q P+R +P+ S D G E E + ++
Sbjct: 171 EGGQRERPQNQQPHRAQRSPQQQPSRLHRPQNQEPQSQDPTPGEEEEILESSLLPPLEEA 230
Query: 586 ARFKRKLQRRLTRQALAEAKAIKE 657
A R L+ A+ E + E
Sbjct: 231 AHGPRGLKGEKGEPAVLEPGMLVE 254
>BX248309-1|CAM26005.1| 1622|Homo sapiens collagen, type XI, alpha 2
protein.
Length = 1622
Score = 30.7 bits (66), Expect = 5.5
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Frame = +1
Query: 412 DGGHRDRPRPCAHHRRQIRRQVPPAR--QPRCSRLTSADAVDGPEGETGRARAAQAVQHG 585
+GG R+RP+ HR Q Q P+R +P+ S D G E E + ++
Sbjct: 201 EGGQRERPQNQQPHRAQRSPQQQPSRLHRPQNQEPQSQDPTPGEEEEILESSLLPPLEEA 260
Query: 586 ARFKRKLQRRLTRQALAEAKAIKE 657
A R L+ A+ E + E
Sbjct: 261 AHGPRGLKGEKGEPAVLEPGMLVE 284
>AL845446-3|CAI95551.1| 1650|Homo sapiens collagen, type XI, alpha 2
protein.
Length = 1650
Score = 30.7 bits (66), Expect = 5.5
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Frame = +1
Query: 412 DGGHRDRPRPCAHHRRQIRRQVPPAR--QPRCSRLTSADAVDGPEGETGRARAAQAVQHG 585
+GG R+RP+ HR Q Q P+R +P+ S D G E E + ++
Sbjct: 229 EGGQRERPQNQQPHRAQRSPQQQPSRLHRPQNQEPQSQDPTPGEEEEILESSLLPPLEEA 288
Query: 586 ARFKRKLQRRLTRQALAEAKAIKE 657
A R L+ A+ E + E
Sbjct: 289 AHGPRGLKGEKGEPAVLEPGMLVE 312
>AL844527-6|CAI41834.1| 1650|Homo sapiens collagen, type XI, alpha 2
protein.
Length = 1650
Score = 30.7 bits (66), Expect = 5.5
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Frame = +1
Query: 412 DGGHRDRPRPCAHHRRQIRRQVPPAR--QPRCSRLTSADAVDGPEGETGRARAAQAVQHG 585
+GG R+RP+ HR Q Q P+R +P+ S D G E E + ++
Sbjct: 229 EGGQRERPQNQQPHRAQRSPQQQPSRLHRPQNQEPQSQDPTPGEEEEILESSLLPPLEEA 288
Query: 586 ARFKRKLQRRLTRQALAEAKAIKE 657
A R L+ A+ E + E
Sbjct: 289 AHGPRGLKGEKGEPAVLEPGMLVE 312
>AL662824-16|CAI17611.2| 1650|Homo sapiens collagen, type XI, alpha
2 protein.
Length = 1650
Score = 30.7 bits (66), Expect = 5.5
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Frame = +1
Query: 412 DGGHRDRPRPCAHHRRQIRRQVPPAR--QPRCSRLTSADAVDGPEGETGRARAAQAVQHG 585
+GG R+RP+ HR Q Q P+R +P+ S D G E E + ++
Sbjct: 229 EGGQRERPQNQQPHRAQRSPQQQPSRLHRPQNQEPQSQDPTPGEEEEILESSLLPPLEEA 288
Query: 586 ARFKRKLQRRLTRQALAEAKAIKE 657
A R L+ A+ E + E
Sbjct: 289 AHGPRGLKGEKGEPAVLEPGMLVE 312
>AL645940-2|CAI18063.2| 1650|Homo sapiens collagen type XI alpha 2
protein.
Length = 1650
Score = 30.7 bits (66), Expect = 5.5
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Frame = +1
Query: 412 DGGHRDRPRPCAHHRRQIRRQVPPAR--QPRCSRLTSADAVDGPEGETGRARAAQAVQHG 585
+GG R+RP+ HR Q Q P+R +P+ S D G E E + ++
Sbjct: 229 EGGQRERPQNQQPHRAQRSPQQQPSRLHRPQNQEPQSQDPTPGEEEEILESSLLPPLEEA 288
Query: 586 ARFKRKLQRRLTRQALAEAKAIKE 657
A R L+ A+ E + E
Sbjct: 289 AHGPRGLKGEKGEPAVLEPGMLVE 312
>AL590709-1|CAI40737.1| 173|Homo sapiens syntaxin binding protein 5
(tomosyn) protein.
Length = 173
Score = 30.7 bits (66), Expect = 5.5
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = +2
Query: 188 VPSDRHTASTPGGSAPGNSD--RTMDKFLCKSLDVVEKSMPSIYMPPEEMYSETRQYVLR 361
VP DR + T G S+P NSD + M+ F+ K+ + S+P+ P ++ + +
Sbjct: 46 VPEDRCKSPTSGSSSPHNSDDEQKMNNFIEKAKMSRKLSLPTDLKP--DLDVKDNSFSRS 103
Query: 362 RADSVTRL 385
R+ SVT +
Sbjct: 104 RSSSVTSI 111
>AL355365-1|CAI40420.1| 173|Homo sapiens syntaxin binding protein 5
(tomosyn) protein.
Length = 173
Score = 30.7 bits (66), Expect = 5.5
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = +2
Query: 188 VPSDRHTASTPGGSAPGNSD--RTMDKFLCKSLDVVEKSMPSIYMPPEEMYSETRQYVLR 361
VP DR + T G S+P NSD + M+ F+ K+ + S+P+ P ++ + +
Sbjct: 46 VPEDRCKSPTSGSSSPHNSDDEQKMNNFIEKAKMSRKLSLPTDLKP--DLDVKDNSFSRS 103
Query: 362 RADSVTRL 385
R+ SVT +
Sbjct: 104 RSSSVTSI 111
>AL031228-15|CAI95623.1| 1650|Homo sapiens collagen type XI alpha 2
protein.
Length = 1650
Score = 30.7 bits (66), Expect = 5.5
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Frame = +1
Query: 412 DGGHRDRPRPCAHHRRQIRRQVPPAR--QPRCSRLTSADAVDGPEGETGRARAAQAVQHG 585
+GG R+RP+ HR Q Q P+R +P+ S D G E E + ++
Sbjct: 229 EGGQRERPQNQQPHRAQRSPQQQPSRLHRPQNQEPQSQDPTPGEEEEILESSLLPPLEEA 288
Query: 586 ARFKRKLQRRLTRQALAEAKAIKE 657
A R L+ A+ E + E
Sbjct: 289 AHGPRGLKGEKGEPAVLEPGMLVE 312
>BC028150-1|AAH28150.1| 467|Homo sapiens sialic acid binding
Ig-like lectin 7 protein.
Length = 467
Score = 30.3 bits (65), Expect = 7.3
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -3
Query: 584 PCCTAWAARALPVSPSGPSTASALVSRLHLGCLAGGTCR 468
P +W R+L + PS PS L ++HLG TCR
Sbjct: 283 PARLSWTWRSLTLYPSQPSNPLVLELQVHLGDEGEFTCR 321
>AY040543-1|AAK83656.1| 467|Homo sapiens sialic acid binding
immunoglobulin-like lectin 7 protein.
Length = 467
Score = 30.3 bits (65), Expect = 7.3
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -3
Query: 584 PCCTAWAARALPVSPSGPSTASALVSRLHLGCLAGGTCR 468
P +W R+L + PS PS L ++HLG TCR
Sbjct: 283 PARLSWTWRSLTLYPSQPSNPLVLELQVHLGDEGEFTCR 321
>AJ130711-1|CAB51127.1| 374|Homo sapiens QA79 membrane protein,
splice product airm-2 protein.
Length = 374
Score = 30.3 bits (65), Expect = 7.3
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -3
Query: 584 PCCTAWAARALPVSPSGPSTASALVSRLHLGCLAGGTCR 468
P +W R+L + PS PS L ++HLG TCR
Sbjct: 190 PARLSWTWRSLTLYPSQPSNPLVLELQVHLGDEGEFTCR 228
>AJ130710-1|CAB51126.1| 467|Homo sapiens QA79 membrane protein,
allelic variant airm-1b protein.
Length = 467
Score = 30.3 bits (65), Expect = 7.3
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -3
Query: 584 PCCTAWAARALPVSPSGPSTASALVSRLHLGCLAGGTCR 468
P +W R+L + PS PS L ++HLG TCR
Sbjct: 283 PARLSWTWRSLTLYPSQPSNPLVLELQVHLGDEGEFTCR 321
>AJ007395-1|CAB46011.1| 467|Homo sapiens QA79 membrane protein
protein.
Length = 467
Score = 30.3 bits (65), Expect = 7.3
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -3
Query: 584 PCCTAWAARALPVSPSGPSTASALVSRLHLGCLAGGTCR 468
P +W R+L + PS PS L ++HLG TCR
Sbjct: 283 PARLSWTWRSLTLYPSQPSNPLVLELQVHLGDEGEFTCR 321
>AF193441-1|AAF06790.1| 374|Homo sapiens Siglec-7 protein.
Length = 374
Score = 30.3 bits (65), Expect = 7.3
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -3
Query: 584 PCCTAWAARALPVSPSGPSTASALVSRLHLGCLAGGTCR 468
P +W R+L + PS PS L ++HLG TCR
Sbjct: 190 PARLSWTWRSLTLYPSQPSNPLVLELQVHLGDEGEFTCR 228
>AF178981-1|AAF44346.1| 316|Homo sapiens D-siglec precursor
protein.
Length = 316
Score = 30.3 bits (65), Expect = 7.3
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -3
Query: 584 PCCTAWAARALPVSPSGPSTASALVSRLHLGCLAGGTCR 468
P +W R+L + PS PS L ++HLG TCR
Sbjct: 190 PARLSWTWRSLTLYPSQPSNPLVLELQVHLGDEGEFTCR 228
>AF170485-1|AAF12759.1| 467|Homo sapiens sialic acid binding
Ig-like lectin-7 protein.
Length = 467
Score = 30.3 bits (65), Expect = 7.3
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -3
Query: 584 PCCTAWAARALPVSPSGPSTASALVSRLHLGCLAGGTCR 468
P +W R+L + PS PS L ++HLG TCR
Sbjct: 283 PARLSWTWRSLTLYPSQPSNPLVLELQVHLGDEGEFTCR 321
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,117,356
Number of Sequences: 237096
Number of extensions: 2809862
Number of successful extensions: 9711
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 8777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9711
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8511181328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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