BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= pg--0842.Seq (724 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AL117203-21|CAN86632.1| 171|Caenorhabditis elegans Hypothetical... 34 0.089 AL117203-20|CAB55118.1| 244|Caenorhabditis elegans Hypothetical... 34 0.089 Z50029-6|CAD57714.1| 1072|Caenorhabditis elegans Hypothetical pr... 30 1.5 Z50029-5|CAC42384.1| 1096|Caenorhabditis elegans Hypothetical pr... 30 1.5 Z50029-3|CAB63416.1| 1087|Caenorhabditis elegans Hypothetical pr... 30 1.5 AF087133-1|AAD14595.1| 728|Caenorhabditis elegans alternatively... 30 1.5 AF087132-1|AAD14594.1| 792|Caenorhabditis elegans alternatively... 30 1.5 AF087131-1|AAD14593.1| 1087|Caenorhabditis elegans alternatively... 30 1.5 AF016688-5|AAB66073.1| 666|Caenorhabditis elegans Hypothetical ... 29 3.4 AF014940-4|AAB63936.2| 322|Caenorhabditis elegans Hypothetical ... 29 3.4 U29082-7|AAA68404.3| 319|Caenorhabditis elegans Hypothetical pr... 29 4.4 L23648-5|AAN63385.1| 381|Caenorhabditis elegans Cyclin t protei... 29 4.4 L23648-4|AAA28033.2| 555|Caenorhabditis elegans Cyclin t protei... 29 4.4 AF016437-1|AAB65884.2| 690|Caenorhabditis elegans Hypothetical ... 29 4.4 Z73978-2|CAA98292.2| 728|Caenorhabditis elegans Hypothetical pr... 28 7.8 Z50863-2|CAA90737.1| 351|Caenorhabditis elegans Hypothetical pr... 28 7.8 U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical pr... 28 7.8 >AL117203-21|CAN86632.1| 171|Caenorhabditis elegans Hypothetical protein Y48C3A.18b protein. Length = 171 Score = 34.3 bits (75), Expect = 0.089 Identities = 16/44 (36%), Positives = 24/44 (54%) Frame = -2 Query: 693 NQFRDIHQNVDLFFDSLGFGQSLPGESPLQLPLEPGSVLHRLGC 562 + FRD+H N+DL D+ S G + + L +E G + R GC Sbjct: 82 DHFRDLHPNIDLILDAGSIISSGEGSTIVDLTVESGFRIVRSGC 125 >AL117203-20|CAB55118.1| 244|Caenorhabditis elegans Hypothetical protein Y48C3A.18a protein. Length = 244 Score = 34.3 bits (75), Expect = 0.089 Identities = 16/44 (36%), Positives = 24/44 (54%) Frame = -2 Query: 693 NQFRDIHQNVDLFFDSLGFGQSLPGESPLQLPLEPGSVLHRLGC 562 + FRD+H N+DL D+ S G + + L +E G + R GC Sbjct: 155 DHFRDLHPNIDLILDAGSIISSGEGSTIVDLTVESGFRIVRSGC 198 >Z50029-6|CAD57714.1| 1072|Caenorhabditis elegans Hypothetical protein ZC504.4d protein. Length = 1072 Score = 30.3 bits (65), Expect = 1.5 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 2/63 (3%) Frame = +1 Query: 391 SCLGFADDGGHR--DRPRPCAHHRRQIRRQVPPARQPRCSRLTSADAVDGPEGETGRARA 564 S G AD H RPRP +HH+R ++ P A P + L + + E E R R Sbjct: 397 SSRGAADGPRHSPASRPRPVSHHQRSPQQSHPAA--PHLADLANYEKRRRSEREERRERE 454 Query: 565 AQA 573 QA Sbjct: 455 RQA 457 >Z50029-5|CAC42384.1| 1096|Caenorhabditis elegans Hypothetical protein ZC504.4c protein. Length = 1096 Score = 30.3 bits (65), Expect = 1.5 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 2/63 (3%) Frame = +1 Query: 391 SCLGFADDGGHR--DRPRPCAHHRRQIRRQVPPARQPRCSRLTSADAVDGPEGETGRARA 564 S G AD H RPRP +HH+R ++ P A P + L + + E E R R Sbjct: 412 SSRGAADGPRHSPASRPRPVSHHQRSPQQSHPAA--PHLADLANYEKRRRSEREERRERE 469 Query: 565 AQA 573 QA Sbjct: 470 RQA 472 >Z50029-3|CAB63416.1| 1087|Caenorhabditis elegans Hypothetical protein ZC504.4a protein. Length = 1087 Score = 30.3 bits (65), Expect = 1.5 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 2/63 (3%) Frame = +1 Query: 391 SCLGFADDGGHR--DRPRPCAHHRRQIRRQVPPARQPRCSRLTSADAVDGPEGETGRARA 564 S G AD H RPRP +HH+R ++ P A P + L + + E E R R Sbjct: 412 SSRGAADGPRHSPASRPRPVSHHQRSPQQSHPAA--PHLADLANYEKRRRSEREERRERE 469 Query: 565 AQA 573 QA Sbjct: 470 RQA 472 >AF087133-1|AAD14595.1| 728|Caenorhabditis elegans alternatively spliced serine/threonineprotein kinase MIG-15 protein. Length = 728 Score = 30.3 bits (65), Expect = 1.5 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 2/63 (3%) Frame = +1 Query: 391 SCLGFADDGGHR--DRPRPCAHHRRQIRRQVPPARQPRCSRLTSADAVDGPEGETGRARA 564 S G AD H RPRP +HH+R ++ P A P + L + + E E R R Sbjct: 44 SSRGAADGPRHSPASRPRPVSHHQRSPQQSHPAA--PHLADLANYEKRRRSEREERRERE 101 Query: 565 AQA 573 QA Sbjct: 102 RQA 104 >AF087132-1|AAD14594.1| 792|Caenorhabditis elegans alternatively spliced serine/threonineprotein kinase MIG-15 protein. Length = 792 Score = 30.3 bits (65), Expect = 1.5 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 2/63 (3%) Frame = +1 Query: 391 SCLGFADDGGHR--DRPRPCAHHRRQIRRQVPPARQPRCSRLTSADAVDGPEGETGRARA 564 S G AD H RPRP +HH+R ++ P A P + L + + E E R R Sbjct: 117 SSRGAADGPRHSPASRPRPVSHHQRSPQQSHPAA--PHLADLANYEKRRRSEREERRERE 174 Query: 565 AQA 573 QA Sbjct: 175 RQA 177 >AF087131-1|AAD14593.1| 1087|Caenorhabditis elegans alternatively spliced serine/threonineprotein kinase MIG-15 protein. Length = 1087 Score = 30.3 bits (65), Expect = 1.5 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 2/63 (3%) Frame = +1 Query: 391 SCLGFADDGGHR--DRPRPCAHHRRQIRRQVPPARQPRCSRLTSADAVDGPEGETGRARA 564 S G AD H RPRP +HH+R ++ P A P + L + + E E R R Sbjct: 412 SSRGAADGPRHSPASRPRPVSHHQRSPQQSHPAA--PHLADLANYEKRRRSEREERRERE 469 Query: 565 AQA 573 QA Sbjct: 470 RQA 472 >AF016688-5|AAB66073.1| 666|Caenorhabditis elegans Hypothetical protein F18A12.7 protein. Length = 666 Score = 29.1 bits (62), Expect = 3.4 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Frame = +2 Query: 233 PGNSDRTMDKFLCKSLDVVEKSM-PSIYMPPEEMYSETRQYVLRRA 367 P N + + F+ K +++E + P I + P+E+ TR Y+ R+A Sbjct: 87 PANESLSNETFIFKLAELLEGPLKPFIVVSPDEIIKVTRDYLERKA 132 >AF014940-4|AAB63936.2| 322|Caenorhabditis elegans Hypothetical protein W02D7.6 protein. Length = 322 Score = 29.1 bits (62), Expect = 3.4 Identities = 22/68 (32%), Positives = 28/68 (41%) Frame = +1 Query: 292 EEYAFNLYASRGDVLRDASIRAPTCGFCDATRHSCLGFADDGGHRDRPRPCAHHRRQIRR 471 +E+ L +SR LR IRA TCG C T S LG R R + + Sbjct: 36 DEFRRRLASSRAHELR--GIRAWTCGLCGTTIPSKLGLERHIYRRHRMEYATREGKSLLM 93 Query: 472 QVPPARQP 495 + A QP Sbjct: 94 RKAYAEQP 101 >U29082-7|AAA68404.3| 319|Caenorhabditis elegans Hypothetical protein C14F5.4 protein. Length = 319 Score = 28.7 bits (61), Expect = 4.4 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%) Frame = +3 Query: 36 TNQPAMPNLEVVSRVASIPIVVSG---IGVTEKLYFKIRESNPLFRWSMSLGEKSLATGI 206 TN+ A L V S VSG + + K YF ++S+PL + + LG ++A I Sbjct: 127 TNRNAKSTLTTKDLVVSYSTAVSGALAMAIGLKTYFAKKQSSPLAQRLVPLGAVAVANAI 186 Query: 207 QLAL 218 + + Sbjct: 187 NIPM 190 >L23648-5|AAN63385.1| 381|Caenorhabditis elegans Cyclin t protein 1.2, isoform b protein. Length = 381 Score = 28.7 bits (61), Expect = 4.4 Identities = 26/109 (23%), Positives = 42/109 (38%), Gaps = 11/109 (10%) Frame = -3 Query: 383 VASQNPHVGARIDASLSTSPLEAYKLKAYSSRPHPATCKGTCPLYDRSF----------- 237 + P V + + S S+S L+ L++Y RP P + P SF Sbjct: 114 IVGMPPQVSSTVTPSGSSSNLKKIDLESYKGRPKPLSNSSDSPSTRPSFLPDVKNQKVVE 173 Query: 236 QELNRREC*LYAGR*GLLTQGHRPTKERVGLPYFEVQFFCHSNTGHDDR 90 QEL + A + + GHRP+ L + +N+ H +R Sbjct: 174 QELMEQRM-KEAAQQKIHRNGHRPSSSSHPLHHHSTSSSASNNSNHQNR 221 >L23648-4|AAA28033.2| 555|Caenorhabditis elegans Cyclin t protein 1.2, isoform a protein. Length = 555 Score = 28.7 bits (61), Expect = 4.4 Identities = 26/109 (23%), Positives = 42/109 (38%), Gaps = 11/109 (10%) Frame = -3 Query: 383 VASQNPHVGARIDASLSTSPLEAYKLKAYSSRPHPATCKGTCPLYDRSF----------- 237 + P V + + S S+S L+ L++Y RP P + P SF Sbjct: 288 IVGMPPQVSSTVTPSGSSSNLKKIDLESYKGRPKPLSNSSDSPSTRPSFLPDVKNQKVVE 347 Query: 236 QELNRREC*LYAGR*GLLTQGHRPTKERVGLPYFEVQFFCHSNTGHDDR 90 QEL + A + + GHRP+ L + +N+ H +R Sbjct: 348 QELMEQRM-KEAAQQKIHRNGHRPSSSSHPLHHHSTSSSASNNSNHQNR 395 >AF016437-1|AAB65884.2| 690|Caenorhabditis elegans Hypothetical protein F13H6.1 protein. Length = 690 Score = 28.7 bits (61), Expect = 4.4 Identities = 15/43 (34%), Positives = 21/43 (48%) Frame = +2 Query: 221 GGSAPGNSDRTMDKFLCKSLDVVEKSMPSIYMPPEEMYSETRQ 349 GGS P S R L ++ ++ S PSI +PP+ S Q Sbjct: 584 GGSPPERSIRPTPSALAEATSLLALSAPSISVPPQPQASTVGQ 626 >Z73978-2|CAA98292.2| 728|Caenorhabditis elegans Hypothetical protein ZC302.1 protein. Length = 728 Score = 27.9 bits (59), Expect = 7.8 Identities = 13/42 (30%), Positives = 25/42 (59%) Frame = +2 Query: 197 DRHTASTPGGSAPGNSDRTMDKFLCKSLDVVEKSMPSIYMPP 322 ++++A GG A +++R D L +DVV K++ + +PP Sbjct: 531 EQYSAIEEGGLAT-SANRNFDSCLMHQIDVVRKTLKKMPLPP 571 >Z50863-2|CAA90737.1| 351|Caenorhabditis elegans Hypothetical protein C14H10.4 protein. Length = 351 Score = 27.9 bits (59), Expect = 7.8 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Frame = +3 Query: 186 KSLATGIQLALPAVQLLETPIV-QWTSSFASRWMWSRRVCLQFIC 317 +S+ + L LPAV +L P+V + F S++ W FIC Sbjct: 249 QSIGPTVLLVLPAVPVLLCPVVASFFHFFFSKFSWQTGWLYSFIC 293 >U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical protein K10D2.1a protein. Length = 1223 Score = 27.9 bits (59), Expect = 7.8 Identities = 13/37 (35%), Positives = 23/37 (62%) Frame = +3 Query: 75 RVASIPIVVSGIGVTEKLYFKIRESNPLFRWSMSLGE 185 R+ S+P++ IGVTE + + E+ L W++ LG+ Sbjct: 984 RLDSLPVL---IGVTEHAAYALTENGRLSTWNLKLGK 1017 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,489,029 Number of Sequences: 27780 Number of extensions: 396155 Number of successful extensions: 1275 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 1188 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1275 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1697838058 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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