Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0842.Seq
(724 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL117203-21|CAN86632.1| 171|Caenorhabditis elegans Hypothetical... 34 0.089
AL117203-20|CAB55118.1| 244|Caenorhabditis elegans Hypothetical... 34 0.089
Z50029-6|CAD57714.1| 1072|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z50029-5|CAC42384.1| 1096|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z50029-3|CAB63416.1| 1087|Caenorhabditis elegans Hypothetical pr... 30 1.5
AF087133-1|AAD14595.1| 728|Caenorhabditis elegans alternatively... 30 1.5
AF087132-1|AAD14594.1| 792|Caenorhabditis elegans alternatively... 30 1.5
AF087131-1|AAD14593.1| 1087|Caenorhabditis elegans alternatively... 30 1.5
AF016688-5|AAB66073.1| 666|Caenorhabditis elegans Hypothetical ... 29 3.4
AF014940-4|AAB63936.2| 322|Caenorhabditis elegans Hypothetical ... 29 3.4
U29082-7|AAA68404.3| 319|Caenorhabditis elegans Hypothetical pr... 29 4.4
L23648-5|AAN63385.1| 381|Caenorhabditis elegans Cyclin t protei... 29 4.4
L23648-4|AAA28033.2| 555|Caenorhabditis elegans Cyclin t protei... 29 4.4
AF016437-1|AAB65884.2| 690|Caenorhabditis elegans Hypothetical ... 29 4.4
Z73978-2|CAA98292.2| 728|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z50863-2|CAA90737.1| 351|Caenorhabditis elegans Hypothetical pr... 28 7.8
U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical pr... 28 7.8
>AL117203-21|CAN86632.1| 171|Caenorhabditis elegans Hypothetical
protein Y48C3A.18b protein.
Length = 171
Score = 34.3 bits (75), Expect = 0.089
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -2
Query: 693 NQFRDIHQNVDLFFDSLGFGQSLPGESPLQLPLEPGSVLHRLGC 562
+ FRD+H N+DL D+ S G + + L +E G + R GC
Sbjct: 82 DHFRDLHPNIDLILDAGSIISSGEGSTIVDLTVESGFRIVRSGC 125
>AL117203-20|CAB55118.1| 244|Caenorhabditis elegans Hypothetical
protein Y48C3A.18a protein.
Length = 244
Score = 34.3 bits (75), Expect = 0.089
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -2
Query: 693 NQFRDIHQNVDLFFDSLGFGQSLPGESPLQLPLEPGSVLHRLGC 562
+ FRD+H N+DL D+ S G + + L +E G + R GC
Sbjct: 155 DHFRDLHPNIDLILDAGSIISSGEGSTIVDLTVESGFRIVRSGC 198
>Z50029-6|CAD57714.1| 1072|Caenorhabditis elegans Hypothetical
protein ZC504.4d protein.
Length = 1072
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +1
Query: 391 SCLGFADDGGHR--DRPRPCAHHRRQIRRQVPPARQPRCSRLTSADAVDGPEGETGRARA 564
S G AD H RPRP +HH+R ++ P A P + L + + E E R R
Sbjct: 397 SSRGAADGPRHSPASRPRPVSHHQRSPQQSHPAA--PHLADLANYEKRRRSEREERRERE 454
Query: 565 AQA 573
QA
Sbjct: 455 RQA 457
>Z50029-5|CAC42384.1| 1096|Caenorhabditis elegans Hypothetical
protein ZC504.4c protein.
Length = 1096
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +1
Query: 391 SCLGFADDGGHR--DRPRPCAHHRRQIRRQVPPARQPRCSRLTSADAVDGPEGETGRARA 564
S G AD H RPRP +HH+R ++ P A P + L + + E E R R
Sbjct: 412 SSRGAADGPRHSPASRPRPVSHHQRSPQQSHPAA--PHLADLANYEKRRRSEREERRERE 469
Query: 565 AQA 573
QA
Sbjct: 470 RQA 472
>Z50029-3|CAB63416.1| 1087|Caenorhabditis elegans Hypothetical
protein ZC504.4a protein.
Length = 1087
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +1
Query: 391 SCLGFADDGGHR--DRPRPCAHHRRQIRRQVPPARQPRCSRLTSADAVDGPEGETGRARA 564
S G AD H RPRP +HH+R ++ P A P + L + + E E R R
Sbjct: 412 SSRGAADGPRHSPASRPRPVSHHQRSPQQSHPAA--PHLADLANYEKRRRSEREERRERE 469
Query: 565 AQA 573
QA
Sbjct: 470 RQA 472
>AF087133-1|AAD14595.1| 728|Caenorhabditis elegans alternatively
spliced serine/threonineprotein kinase MIG-15 protein.
Length = 728
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +1
Query: 391 SCLGFADDGGHR--DRPRPCAHHRRQIRRQVPPARQPRCSRLTSADAVDGPEGETGRARA 564
S G AD H RPRP +HH+R ++ P A P + L + + E E R R
Sbjct: 44 SSRGAADGPRHSPASRPRPVSHHQRSPQQSHPAA--PHLADLANYEKRRRSEREERRERE 101
Query: 565 AQA 573
QA
Sbjct: 102 RQA 104
>AF087132-1|AAD14594.1| 792|Caenorhabditis elegans alternatively
spliced serine/threonineprotein kinase MIG-15 protein.
Length = 792
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +1
Query: 391 SCLGFADDGGHR--DRPRPCAHHRRQIRRQVPPARQPRCSRLTSADAVDGPEGETGRARA 564
S G AD H RPRP +HH+R ++ P A P + L + + E E R R
Sbjct: 117 SSRGAADGPRHSPASRPRPVSHHQRSPQQSHPAA--PHLADLANYEKRRRSEREERRERE 174
Query: 565 AQA 573
QA
Sbjct: 175 RQA 177
>AF087131-1|AAD14593.1| 1087|Caenorhabditis elegans alternatively
spliced serine/threonineprotein kinase MIG-15 protein.
Length = 1087
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +1
Query: 391 SCLGFADDGGHR--DRPRPCAHHRRQIRRQVPPARQPRCSRLTSADAVDGPEGETGRARA 564
S G AD H RPRP +HH+R ++ P A P + L + + E E R R
Sbjct: 412 SSRGAADGPRHSPASRPRPVSHHQRSPQQSHPAA--PHLADLANYEKRRRSEREERRERE 469
Query: 565 AQA 573
QA
Sbjct: 470 RQA 472
>AF016688-5|AAB66073.1| 666|Caenorhabditis elegans Hypothetical
protein F18A12.7 protein.
Length = 666
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +2
Query: 233 PGNSDRTMDKFLCKSLDVVEKSM-PSIYMPPEEMYSETRQYVLRRA 367
P N + + F+ K +++E + P I + P+E+ TR Y+ R+A
Sbjct: 87 PANESLSNETFIFKLAELLEGPLKPFIVVSPDEIIKVTRDYLERKA 132
>AF014940-4|AAB63936.2| 322|Caenorhabditis elegans Hypothetical
protein W02D7.6 protein.
Length = 322
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/68 (32%), Positives = 28/68 (41%)
Frame = +1
Query: 292 EEYAFNLYASRGDVLRDASIRAPTCGFCDATRHSCLGFADDGGHRDRPRPCAHHRRQIRR 471
+E+ L +SR LR IRA TCG C T S LG R R + +
Sbjct: 36 DEFRRRLASSRAHELR--GIRAWTCGLCGTTIPSKLGLERHIYRRHRMEYATREGKSLLM 93
Query: 472 QVPPARQP 495
+ A QP
Sbjct: 94 RKAYAEQP 101
>U29082-7|AAA68404.3| 319|Caenorhabditis elegans Hypothetical
protein C14F5.4 protein.
Length = 319
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = +3
Query: 36 TNQPAMPNLEVVSRVASIPIVVSG---IGVTEKLYFKIRESNPLFRWSMSLGEKSLATGI 206
TN+ A L V S VSG + + K YF ++S+PL + + LG ++A I
Sbjct: 127 TNRNAKSTLTTKDLVVSYSTAVSGALAMAIGLKTYFAKKQSSPLAQRLVPLGAVAVANAI 186
Query: 207 QLAL 218
+ +
Sbjct: 187 NIPM 190
>L23648-5|AAN63385.1| 381|Caenorhabditis elegans Cyclin t protein
1.2, isoform b protein.
Length = 381
Score = 28.7 bits (61), Expect = 4.4
Identities = 26/109 (23%), Positives = 42/109 (38%), Gaps = 11/109 (10%)
Frame = -3
Query: 383 VASQNPHVGARIDASLSTSPLEAYKLKAYSSRPHPATCKGTCPLYDRSF----------- 237
+ P V + + S S+S L+ L++Y RP P + P SF
Sbjct: 114 IVGMPPQVSSTVTPSGSSSNLKKIDLESYKGRPKPLSNSSDSPSTRPSFLPDVKNQKVVE 173
Query: 236 QELNRREC*LYAGR*GLLTQGHRPTKERVGLPYFEVQFFCHSNTGHDDR 90
QEL + A + + GHRP+ L + +N+ H +R
Sbjct: 174 QELMEQRM-KEAAQQKIHRNGHRPSSSSHPLHHHSTSSSASNNSNHQNR 221
>L23648-4|AAA28033.2| 555|Caenorhabditis elegans Cyclin t protein
1.2, isoform a protein.
Length = 555
Score = 28.7 bits (61), Expect = 4.4
Identities = 26/109 (23%), Positives = 42/109 (38%), Gaps = 11/109 (10%)
Frame = -3
Query: 383 VASQNPHVGARIDASLSTSPLEAYKLKAYSSRPHPATCKGTCPLYDRSF----------- 237
+ P V + + S S+S L+ L++Y RP P + P SF
Sbjct: 288 IVGMPPQVSSTVTPSGSSSNLKKIDLESYKGRPKPLSNSSDSPSTRPSFLPDVKNQKVVE 347
Query: 236 QELNRREC*LYAGR*GLLTQGHRPTKERVGLPYFEVQFFCHSNTGHDDR 90
QEL + A + + GHRP+ L + +N+ H +R
Sbjct: 348 QELMEQRM-KEAAQQKIHRNGHRPSSSSHPLHHHSTSSSASNNSNHQNR 395
>AF016437-1|AAB65884.2| 690|Caenorhabditis elegans Hypothetical
protein F13H6.1 protein.
Length = 690
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 221 GGSAPGNSDRTMDKFLCKSLDVVEKSMPSIYMPPEEMYSETRQ 349
GGS P S R L ++ ++ S PSI +PP+ S Q
Sbjct: 584 GGSPPERSIRPTPSALAEATSLLALSAPSISVPPQPQASTVGQ 626
>Z73978-2|CAA98292.2| 728|Caenorhabditis elegans Hypothetical
protein ZC302.1 protein.
Length = 728
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +2
Query: 197 DRHTASTPGGSAPGNSDRTMDKFLCKSLDVVEKSMPSIYMPP 322
++++A GG A +++R D L +DVV K++ + +PP
Sbjct: 531 EQYSAIEEGGLAT-SANRNFDSCLMHQIDVVRKTLKKMPLPP 571
>Z50863-2|CAA90737.1| 351|Caenorhabditis elegans Hypothetical
protein C14H10.4 protein.
Length = 351
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 186 KSLATGIQLALPAVQLLETPIV-QWTSSFASRWMWSRRVCLQFIC 317
+S+ + L LPAV +L P+V + F S++ W FIC
Sbjct: 249 QSIGPTVLLVLPAVPVLLCPVVASFFHFFFSKFSWQTGWLYSFIC 293
>U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical protein
K10D2.1a protein.
Length = 1223
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +3
Query: 75 RVASIPIVVSGIGVTEKLYFKIRESNPLFRWSMSLGE 185
R+ S+P++ IGVTE + + E+ L W++ LG+
Sbjct: 984 RLDSLPVL---IGVTEHAAYALTENGRLSTWNLKLGK 1017
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,489,029
Number of Sequences: 27780
Number of extensions: 396155
Number of successful extensions: 1275
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1275
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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