Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0842.Seq
(724 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59310.1 68418.m07432 lipid transfer protein 4 (LTP4) identic... 30 1.4
At1g53320.1 68414.m06043 F-box family protein / tubby family pro... 29 2.4
At2g40050.1 68415.m04921 DC1 domain-containing protein contains ... 29 3.1
At5g55780.1 68418.m06952 DC1 domain-containing protein contains ... 28 5.5
At5g45340.2 68418.m05566 cytochrome P450 family protein similar ... 28 5.5
At5g45340.1 68418.m05565 cytochrome P450 family protein similar ... 28 5.5
At4g22850.1 68417.m03300 expressed protein 28 5.5
At2g36490.1 68415.m04479 HhH-GPD base excision DNA repair family... 28 5.5
At5g15850.1 68418.m01854 zinc finger protein CONSTANS-LIKE 1 (CO... 27 9.5
At3g61670.1 68416.m06911 expressed protein weak similarity to ex... 27 9.5
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 27 9.5
At1g61600.1 68414.m06941 expressed protein 27 9.5
>At5g59310.1 68418.m07432 lipid transfer protein 4 (LTP4) identical
to lipid transfer protein 4 from Arabidopsis thaliana
[gi:8571923]; contains Pfam protease inhibitor/seed
storage/LTP family domain PF00234
Length = 112
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +1
Query: 355 APTCGFCDATRHSCLGFADDGGHRDRPRPCAHHRRQIR--RQVPPARQPRCSRLTSA 519
A TCG ++ CLG+ GG P PC +++ Q P RQ C L SA
Sbjct: 24 AITCGTVASSLSPCLGYLSKGG--VVPPPCCAGVKKLNGMAQTTPDRQQACRCLQSA 78
>At1g53320.1 68414.m06043 F-box family protein / tubby family
protein (TULP7) similar to Tubby related protein 2
(Tubby-like protein 2) (P4-6 protein) (Fragment)
(SP:P46686) [Mus musculus]; similar to phosphodiesterase
(GI:467578) [Mus musculus]; similar to Tubby protein
homolog 1. (Swiss-Prot:Q09306) [Caenorhabditis elegans]
contains Pfam profile: PF01167: Tub family; contains
Pfam PF00646: F-box domain
Length = 379
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +1
Query: 196 RPAYS*HSRRFSSWKLRSYNGQVPLQVAGCGREEYAFNLYASRGDVLRDASIRAPT 363
+P+ SRRF+S + + QVP G Y FNL SRG +++R P+
Sbjct: 201 KPSNGKASRRFAS---KQISPQVPAGNFEVGHVSYKFNLLKSRGPRRMVSTLRCPS 253
>At2g40050.1 68415.m04921 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 609
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 304 FNLYASRGDVLRDASIRAPTCGFCDATRHSCLGFADDGGHR 426
FN + R VL +I P CG C ++ C+G D G+R
Sbjct: 564 FNKWVCRVQVLPKCNISRPLCGSC---KNRCIGKIYDVGYR 601
>At5g55780.1 68418.m06952 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 685
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -3
Query: 347 DASLSTSPLEAYKLKAYSSRPHPATCKGTCPLYDRSFQELNRREC 213
D L S A ++K Y PHP T KGT ++ ++ EC
Sbjct: 406 DFILHESCANAPRMKRYPLYPHPLTLKGTTTRHENQKGKVCCSEC 450
>At5g45340.2 68418.m05566 cytochrome P450 family protein similar to
SP|Q42569|C901_ARATH Cytochrome P450 90A1 (SP:Q42569)
[Arabidopsis thaliana]; contains Pfam profile: PF00067:
Cytochrome P450
Length = 446
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -2
Query: 687 FRDIHQNVDLFFDSLGFGQSLPGESPLQLPLEP-GSVLHRLGCPG 556
FR+IH N D+F D F S +P P GS +H CPG
Sbjct: 371 FRNIHHNADIFSDPGKFDPSRFEVAPKPNTFMPFGSGIH--SCPG 413
>At5g45340.1 68418.m05565 cytochrome P450 family protein similar to
SP|Q42569|C901_ARATH Cytochrome P450 90A1 (SP:Q42569)
[Arabidopsis thaliana]; contains Pfam profile: PF00067:
Cytochrome P450
Length = 463
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -2
Query: 687 FRDIHQNVDLFFDSLGFGQSLPGESPLQLPLEP-GSVLHRLGCPG 556
FR+IH N D+F D F S +P P GS +H CPG
Sbjct: 371 FRNIHHNADIFSDPGKFDPSRFEVAPKPNTFMPFGSGIH--SCPG 413
>At4g22850.1 68417.m03300 expressed protein
Length = 296
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -3
Query: 152 VGLPYFEVQFFCHSNTGHDDRY 87
V LPYF Q FCH G +RY
Sbjct: 148 VSLPYFIGQLFCHKIQGWLERY 169
>At2g36490.1 68415.m04479 HhH-GPD base excision DNA repair family
protein (ROS1) similar to DEMETER protein [Arabidopsis
thaliana] GI:21743571; contains Pfam profile PF00730:
HhH-GPD superfamily base excision DNA repair protein
Length = 1393
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 451 HRRQIRRQVPPARQPRCSRLTSADAVDGPEGETGRAR 561
HR ++RR+ P R+P+ + DG E +T + +
Sbjct: 122 HRPKVRREAKPKREPKPRAPRKSVVTDGQESKTPKRK 158
>At5g15850.1 68418.m01854 zinc finger protein CONSTANS-LIKE 1 (COL1)
identical to Zinc finger protein CONSTANS-LIKE 1
SP:O50055 from [Arabidopsis thaliana]
Length = 355
Score = 27.5 bits (58), Expect = 9.5
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Frame = +1
Query: 277 AGCGREEYAFNLYASRGDVLR--DASIRAPTCGFCDATRHSCLGFADDGGHRDRPRPCAH 450
+ C + +A N ASR + +R + RAP FC A S D H P H
Sbjct: 33 SSCDAQVHAANRLASRHERVRVCQSCERAPAAFFCKADAASLCTTCDSEIHSANPLARRH 92
Query: 451 HR 456
R
Sbjct: 93 QR 94
>At3g61670.1 68416.m06911 expressed protein weak similarity to
extra-large G-protein [Arabidopsis thaliana] GI:3201682
Length = 790
Score = 27.5 bits (58), Expect = 9.5
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -3
Query: 173 HR-PTKERVGLPYFEVQFFCHSNTGHDDRYGCNP*DHFKIRHGWLICFRHC 24
HR P R PYF Q+ ++N GH D + P + H C+ HC
Sbjct: 285 HRFPIHGRGPHPYFSGQYVGNNNNGH-DLFDAYPQQNGHFHHSSCSCY-HC 333
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 27.5 bits (58), Expect = 9.5
Identities = 19/63 (30%), Positives = 25/63 (39%)
Frame = +1
Query: 424 RDRPRPCAHHRRQIRRQVPPARQPRCSRLTSADAVDGPEGETGRARAAQAVQHGARFKRK 603
RDRPR HHR + + R R R + D D + R R + H RK
Sbjct: 291 RDRPREDKHHRDRDQGGRDRDRDSRRDRDRTRDRGDRDRRDRDRGRDRTSRDHDRDRSRK 350
Query: 604 LQR 612
+R
Sbjct: 351 KER 353
>At1g61600.1 68414.m06941 expressed protein
Length = 421
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = -2
Query: 609 LQLPLEPGSVLHRLGCPGPARLPFRPVHRIGAGQSAASWLSGGR 478
+Q P PG + G P L F V R+ W+ GGR
Sbjct: 311 VQGPRGPGERRRKTGLRSPVGLSFVVVERMRRVMEEGGWVGGGR 354
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,750,694
Number of Sequences: 28952
Number of extensions: 373208
Number of successful extensions: 1120
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -