Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0840.Seq
         (726 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5W685 Cluster: Putative uncharacterized protein OSJNBa...    33   7.2  
UniRef50_Q8IL77 Cluster: Putative uncharacterized protein; n=1; ...    33   9.5  

>UniRef50_Q5W685 Cluster: Putative uncharacterized protein
           OSJNBa0076A09.12; n=1; Oryza sativa (japonica
           cultivar-group)|Rep: Putative uncharacterized protein
           OSJNBa0076A09.12 - Oryza sativa subsp. japonica (Rice)
          Length = 435

 Score = 33.1 bits (72), Expect = 7.2
 Identities = 19/52 (36%), Positives = 23/52 (44%)
 Frame = +1

Query: 484 RPRTHRY*WRAGGPARLGTTSLPISNQNQLTREIVFPSPAIKMCLIYRKVKR 639
           RPR  R  WR GG     T+SLP+   + +T      SPA    L  R   R
Sbjct: 334 RPRRRRLRWRRGGGPSTPTSSLPLCRPSPITGRPTSSSPASPRRLACRDSSR 385


>UniRef50_Q8IL77 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium falciparum 3D7|Rep: Putative uncharacterized
           protein - Plasmodium falciparum (isolate 3D7)
          Length = 1226

 Score = 32.7 bits (71), Expect = 9.5
 Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
 Frame = +2

Query: 254 LVRPFVTYMIVTIFVYVF--VQKIFKEKTKLKLYI 352
           L++  +T+ I+   +YVF  +QKI+K K K K+Y+
Sbjct: 763 LLKLKITFQIIKTMIYVFNLIQKIYKNKDKEKIYL 797


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 660,643,765
Number of Sequences: 1657284
Number of extensions: 12749913
Number of successful extensions: 26518
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 25661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26506
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 59090914597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)