Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0840.Seq
         (726 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    25   0.47 
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    25   0.47 

>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -3

Query: 685 MALSWQVAKMSLQPNTFSPFDILGTFLLLVMETQSRGSIGFGLR*AGRLY 536
           +  SW+ A++      ++ F +LGTFL+   + Q   + G  L  A RL+
Sbjct: 46  LRFSWKSARV-----VYALFTLLGTFLISGFQMQKIATKGLDLLEANRLF 90


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -3

Query: 685 MALSWQVAKMSLQPNTFSPFDILGTFLLLVMETQSRGSIGFGLR*AGRLY 536
           +  SW+ A++      ++ F +LGTFL+   + Q   + G  L  A RL+
Sbjct: 46  LRFSWKSARV-----VYALFTLLGTFLISGFQMQKIATKGLDLLEANRLF 90


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,359
Number of Sequences: 336
Number of extensions: 3873
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19363530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)