Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0840.Seq
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    26   4.8  
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr...    26   6.3  
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    25   8.3  
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi...    25   8.3  

>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1188

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +1

Query: 538 TTSLPISNQNQLTREIVFPSPAIKMCLIYRKVKR 639
           T  +PIS++   T  + FPSP+I +  + ++VK+
Sbjct: 128 TRDVPISDEK--TNILFFPSPSIDLSYVSKEVKQ 159


>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 585

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 552 YLKPKPIDPRDCVSITSN 605
           Y +P P++PRD +SI  N
Sbjct: 335 YWRPNPLNPRDALSILVN 352


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 295 CVCFCTENI*RENKIKTLYLLLMDDIYKGGEKKS 396
           C+  C+EN   + + KTL    +D  Y G  KKS
Sbjct: 25  CLPDCSENAVAQTRSKTLDNAALDLPYVGNRKKS 58


>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
           Tea4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 304 NIHKYSNDHISDKRTD*N 251
           +IH Y NDH+S K  + N
Sbjct: 725 DIHAYDNDHVSTKNKEFN 742


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,858,840
Number of Sequences: 5004
Number of extensions: 57555
Number of successful extensions: 114
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)