Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0840.Seq
         (726 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0471 + 8734292-8734788,8735168-8735654,8735766-8736551           29   5.0  
08_01_0505 - 4379722-4380795,4380868-4381008,4381099-4381270,438...    28   8.7  

>03_02_0471 + 8734292-8734788,8735168-8735654,8735766-8736551
          Length = 589

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 456 RFAFYVSDGKATHAPLLMEGGWSRTVRYNL 545
           RFAFYV  G  +   L   G +S+T+RY L
Sbjct: 445 RFAFYVRPGALSDVGLGYIGEFSKTIRYML 474


>08_01_0505 -
           4379722-4380795,4380868-4381008,4381099-4381270,
           4381944-4382047,4382127-4382259,4384477-4384653,
           4385164-4385309,4385536-4385625,4385703-4385915,
           4386090-4386182,4386743-4386937,4387018-4387110,
           4387924-4388019,4388556-4388985,4389424-4390091,
           4392074-4392271,4392690-4393407,4394036-4394181
          Length = 1628

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -2

Query: 692 TLNGSLMASCKNVASTKYLFTFRY-IRHIFIAGDGNTI 582
           T  G L A   N+ +   L   RY IRH F+A  GNT+
Sbjct: 739 TETGRLSARTPNLQNQPALEKDRYKIRHAFVAAPGNTL 776


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,092,943
Number of Sequences: 37544
Number of extensions: 325609
Number of successful extensions: 610
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)