Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0840.Seq
         (726 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34108| Best HMM Match : DUF714 (HMM E-Value=0.0053)                 30   1.7  
SB_14117| Best HMM Match : 7tm_2 (HMM E-Value=2.4e-25)                 29   2.9  
SB_1477| Best HMM Match : RVT_1 (HMM E-Value=0.00065)                  29   5.1  
SB_45327| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_6892| Best HMM Match : TSP_3 (HMM E-Value=2.94273e-44)              28   6.7  

>SB_34108| Best HMM Match : DUF714 (HMM E-Value=0.0053)
          Length = 455

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 6/31 (19%)
 Frame = -3

Query: 673 WQVAKMSLQPNTF------SPFDILGTFLLL 599
           W VAK++++PNTF       PFDI   F +L
Sbjct: 92  WSVAKLAVRPNTFRYLVFYCPFDIFNKFFML 122


>SB_14117| Best HMM Match : 7tm_2 (HMM E-Value=2.4e-25)
          Length = 294

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +2

Query: 215 VGMFIDTYNKYVVLVRPFVTYMIVTIFVYVFVQKIFKEKTKLKLYICY 358
           V +F+     Y+ LV  F   M+  +++Y+ V K+F    K+KLY  +
Sbjct: 73  VCIFVAIVIHYMYLVA-FGWMMLEGVYLYLMVVKVFNTDVKMKLYYAF 119


>SB_1477| Best HMM Match : RVT_1 (HMM E-Value=0.00065)
          Length = 325

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = -1

Query: 714 DIFS---KILNFKWLSHGKLQKCRFNQIPFHLS 625
           +IFS   K L F W+  GK++   FN +PF L+
Sbjct: 217 EIFSDHRKYLGFSWIMEGKVRYFVFNVLPFGLT 249


>SB_45327| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 147

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 245 YVVLVRPFVTYMIVTIFVYVFVQKIFKEKTKLKLYICY 358
           Y+ LV  F   M+  +++Y+ V K+F    K+KLY  +
Sbjct: 4   YMYLVA-FGWMMLEGVYLYLMVVKVFNTDVKMKLYYAF 40


>SB_6892| Best HMM Match : TSP_3 (HMM E-Value=2.94273e-44)
          Length = 749

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -2

Query: 629 FRYIRHIFIAGDGNTISRVNWFWFEIGREVVPNRAGPPAL 510
           FR    + +  +GN+     W   + GREVV  R G P L
Sbjct: 596 FRRFEEVLLDDEGNSQPPPKWVIRDSGREVVQLRNGNPGL 635


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,341,433
Number of Sequences: 59808
Number of extensions: 392791
Number of successful extensions: 758
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)