Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0840.Seq
         (726 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF024503-11|AAG24091.2|  325|Caenorhabditis elegans Serpentine r...    29   2.6  
AF024503-3|AAG24098.3|  331|Caenorhabditis elegans Serpentine re...    28   5.9  

>AF024503-11|AAG24091.2|  325|Caenorhabditis elegans Serpentine
           receptor, class u protein24 protein.
          Length = 325

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +2

Query: 218 GMFIDTYNKYVVLVRPFVTYMIVTIFVYVF--VQKIFKEKTKLKLYI 352
           G+F  +   Y++++RPF   +   I  +VF     IF+EK K ++ +
Sbjct: 271 GIFFPSVAVYLIVIRPFTNDLDTCIVPWVFYLTHPIFQEKPKNRIIV 317


>AF024503-3|AAG24098.3|  331|Caenorhabditis elegans Serpentine
           receptor, class j protein6 protein.
          Length = 331

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 9/44 (20%), Positives = 27/44 (61%)
 Frame = +2

Query: 221 MFIDTYNKYVVLVRPFVTYMIVTIFVYVFVQKIFKEKTKLKLYI 352
           ++++ Y+KY+ ++   ++Y++  +F+Y+ + K  K   K +  +
Sbjct: 2   IYLNWYHKYLPIIFGVLSYIVNPLFIYLVLTKSSKHMGKYRFLL 45


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,695,254
Number of Sequences: 27780
Number of extensions: 317585
Number of successful extensions: 647
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)