Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0840.Seq
         (726 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.2  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    21   9.0  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   9.0  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +1

Query: 553 ISNQNQLTREIVFPSPAIKMCL 618
           +SN N+L R +V  S  +++C+
Sbjct: 37  LSNYNKLVRPVVNTSDVLRVCI 58


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +1

Query: 553 ISNQNQLTREIVFPSPAIKMCL 618
           +SN N+L R +V  S  +++C+
Sbjct: 37  LSNYNKLVRPVVNTSDVLRVCI 58


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -2

Query: 560 FEIGREVVPNRAGPPALH 507
           FE+GR     + GP  +H
Sbjct: 27  FELGRPAANTKLGPQRIH 44


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 86  FNLMVTREKKKLRNTTCFNFNK 21
           F ++    K+ +RNT C N N+
Sbjct: 398 FRILGANVKELIRNTHCVNNNQ 419


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,240
Number of Sequences: 438
Number of extensions: 4025
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)