Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0840.Seq
         (726 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16090.1 68416.m02033 zinc finger (C3HC4-type RING finger) fa...    26   2.9  
At1g79250.1 68414.m09239 protein kinase, putative similar to vir...    29   3.1  

>At3g16090.1 68416.m02033 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 492

 Score = 25.8 bits (54), Expect(2) = 2.9
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +2

Query: 296 VYVFVQKIFKEKTKLKLYICY*WTIYIRGVKKNQTTRELF 415
           VY F  ++ ++   L +YIC+ + I++         REL+
Sbjct: 211 VYTFYLELIRDLLHLSMYICFFFVIFMNYGVPLHLLRELY 250



 Score = 21.8 bits (44), Expect(2) = 2.9
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +2

Query: 200 FIYNKVGMFIDTYNKYVVLVRPFVTYMIVTIFVYVFVQKIF 322
           F+Y+ +   I +    V L   F   ++ T  V +FV+ +F
Sbjct: 155 FMYSSIRHLIQSRQASVSLFFSFEYMILATTTVAIFVKYVF 195


>At1g79250.1 68414.m09239 protein kinase, putative similar to viroid
           symptom modulation protein/dual-specificity protein
           kinase [Lycopersicon esculentum] gi|7672777|gb|AAF66637
          Length = 555

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = -2

Query: 689 LNGS---LMASCKNVASTKYLFTFRYIRHIFIAGDGNTISRVNWFWFEI 552
           +NGS   LMA   NV S  ++ T  Y+    I G+G+  S V+W+ F I
Sbjct: 361 VNGSMPELMAEPTNVKSMSFVGTHEYLAPEIIRGEGHG-SAVDWWTFGI 408


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,323,897
Number of Sequences: 28952
Number of extensions: 277669
Number of successful extensions: 523
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)