Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0838X.Seq
         (442 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    24   0.74 
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    24   0.74 
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   2.2  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    22   2.2  
DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory pro...    22   3.0  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    21   3.9  

>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 0.74
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 320 TYPTAGGGPREVRGASR 370
           T+P+ GGGPR   G  R
Sbjct: 64  THPSIGGGPRFSSGVGR 80


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 23.8 bits (49), Expect = 0.74
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 320 TYPTAGGGPREVRGASR 370
           T+P+ GGGPR   G  R
Sbjct: 64  THPSIGGGPRFSSGVGR 80


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = -2

Query: 378 WRSRDAPRTSRGPPPAVGYVGSGQPLRTQRSAEPSPS 268
           W +   P T   P      + S  P   Q SA+P+PS
Sbjct: 307 WSTVQTPTTVMSPTINCWSLTSSPPPPYQISAQPTPS 343


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 299 RSGCPEPTYPTAGGGPREVRGASR 370
           R GC   +  T  GGPR  R A++
Sbjct: 54  RWGCARASSATTMGGPRYGRAAAQ 77


>DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory
           protein 15 protein.
          Length = 146

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -2

Query: 144 VFGLLLTHGSAVERIV 97
           VFG LLT+ S+VE ++
Sbjct: 9   VFGALLTYVSSVEYLI 24


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 323 YPTAGGGPREVRGASRDRHRQAVRGQ 400
           YP  G    E+RG SR ++ + V  Q
Sbjct: 445 YPLIGAMREELRGISRGKNAKDVDWQ 470


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,030
Number of Sequences: 336
Number of extensions: 1104
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9880622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)