Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0836X.Seq
         (399 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    22   2.6  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   3.4  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   4.5  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    21   5.9  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    21   5.9  

>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 328 ASAKGCLLSYNLNGHKVHNLNKGP 257
           +S K   + +  + HK H+L+K P
Sbjct: 260 SSEKKSSIQHGDDAHKTHHLDKNP 283


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -1

Query: 78  LGMVTLTKLE-TTYIFKLLAKQTKKCN 1
           LG   +  L+ T+Y  K L KQ ++CN
Sbjct: 463 LGRAVVPTLDATSYYAKDLEKQRQQCN 489


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = -3

Query: 205 CLVRVVRYTANYNCRRNQC*PIFNSKTKPSANRIWNW 95
           C++     TA   CR  +C  +  SK+     R  NW
Sbjct: 48  CVINKKNRTACKACRLRKCLLVGMSKSGSRYGRRSNW 84


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 153 SANQSLTPRRNHPPTESGIGKLDR 82
           + N    P R+HP  E  + +LDR
Sbjct: 342 NGNAHNCPSRSHPVWEIVMNELDR 365


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 153 SANQSLTPRRNHPPTESGIGKLDR 82
           + N    P R+HP  E  + +LDR
Sbjct: 349 NGNAHNCPSRSHPVWEIVMNELDR 372


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,028
Number of Sequences: 336
Number of extensions: 1684
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8541369
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)