Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0836X.Seq
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27 |Schizo...    26   2.5  
SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom...    25   3.3  
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    25   3.3  
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    25   4.3  
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...    25   5.7  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    25   5.7  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   5.7  
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    25   5.7  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    25   5.7  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    24   7.6  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    24   7.6  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    24   10.0 
SPAC1556.03 |azr1||serine/threonine protein phosphatase Azr1|Sch...    24   10.0 
SPAC9E9.10c |cbh1|cbh|centromere binding protein |Schizosaccharo...    24   10.0 

>SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 413

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +2

Query: 17 CFAKSLKMYVVSNLVKVTIPNYLSSLP 97
          C  KSL++Y +SN ++   PN +S+LP
Sbjct: 8  CEEKSLQLYPLSNKIRHVNPN-ISALP 33


>SPAC6F12.13c |fps1||geranyltranstransferase
           Fps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 71  IPNYLSSLPIPDSVGGWFR 127
           I NYL ++ IPD V  W++
Sbjct: 21  IVNYLKTINIPDDVTEWYK 39


>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -3

Query: 244 FYLTIASFSGFFYCLVRVVRYTA 176
           FY+T   +  ++Y  ++VV YT+
Sbjct: 378 FYITFYCWDNYYYSFLQVVHYTS 400


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 10/52 (19%), Positives = 26/52 (50%)
 Frame = +2

Query: 38  MYVVSNLVKVTIPNYLSSLPIPDSVGGWFRLGVKDWLALIPPTVVVGGISYY 193
           M+    +V VT+   + +  + + +  +  +    W+ ++PP++V    SY+
Sbjct: 807 MFPKGGVVSVTLSALIKTPRLLELISPFLEIKKDSWILILPPSIVDMVKSYF 858


>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
 Frame = +2

Query: 11  LVCFAKSLKMYVVSNLVKVTIPN----YLSSLPI 100
           L+C   SLK+  VS L+ V  P     Y+S  P+
Sbjct: 369 LICIGTSLKVAPVSELISVIPPTTPQIYISRTPV 402


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 239 FDHCQLLWLFLLSGKSSKIYRQLQ 168
           FD C+ LW   +SGK   +  ++Q
Sbjct: 555 FDGCEALWTVSISGKLRNMKSRIQ 578


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 183  IPPTTTVGGISANQSLTPRRNHPPT 109
            IPP   V  I ++ +  P ++HPP+
Sbjct: 969  IPPPLPVSNILSSPTSEPPKDHPPS 993


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 205 NKKSQRSWQWSNKTL 249
           N  S R+W W +KTL
Sbjct: 420 NDSSARTWNWKSKTL 434


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 98   IPDSVGGWFRLGVKDWL 148
            +P+S+   FR G+K W+
Sbjct: 1084 VPESINSLFRAGIKFWM 1100


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 109 RIWNWQARQIV 77
           RIWNWQ+R  +
Sbjct: 120 RIWNWQSRNCI 130


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1465

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = -3

Query: 292  NGHKVHNLNKGPPVPGFYLTIASFSGFFYC 203
            NG     LN   P P FYL I  F GF  C
Sbjct: 931  NGKSSSELN---PSPYFYLGIYLFFGFLSC 957


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 137 KDWLALIPPTVVVGGISYYSYQTIKKAREAGNGQIKPW 250
           KDW+    PT+V+ GI   S +  + ARE    QI+ W
Sbjct: 127 KDWMEANFPTLVIDGID-VSVRFSRAARE----QIEGW 159


>SPAC1556.03 |azr1||serine/threonine protein phosphatase
           Azr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 288

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 325 SAKGCLLSYNLNGHKVHNLNKG 260
           S+  CL  +N    K+H+LN G
Sbjct: 127 SSTACLTLFNCGNGKLHSLNLG 148


>SPAC9E9.10c |cbh1|cbh|centromere binding protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 514

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 71  IPNYLSSLPIPDSVGGW 121
           IP Y +SLP+PD   GW
Sbjct: 115 IPAY-ASLPLPDFSNGW 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,525,166
Number of Sequences: 5004
Number of extensions: 27957
Number of successful extensions: 90
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)