Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0836X.Seq
         (399 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0307 - 16546692-16546791,16548107-16548336                       61   3e-10
03_05_0203 - 21951622-21951766,21951936-21952005,21952325-21952409     30   0.77 
06_03_1176 - 28172230-28172547,28172691-28172849,28172962-28174194     29   1.4  
08_02_0610 + 19307537-19308011,19308187-19310846                       26   9.5  
06_03_0934 - 26073084-26073220,26073296-26073345,26073465-260736...    26   9.5  
06_03_0912 + 25896152-25896451,25896528-25897296,25897492-258976...    26   9.5  
04_03_0357 + 14852584-14853058,14853116-14855754                       26   9.5  

>07_03_0307 - 16546692-16546791,16548107-16548336
          Length = 109

 Score = 61.3 bits (142), Expect = 3e-10
 Identities = 31/60 (51%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
 Frame = +2

Query: 221 EAGNGQIKPWNRRAFIKVVD-FMAIEVITEKASLCRCWRSKNWPYCDGSHGPHNKETGEN 397
           EAG G I P  R+   KVVD  +A E+       CRCWRS  +P CDGSH  HNK TG+N
Sbjct: 42  EAGVGGINPSIRKEEEKVVDTVLAGELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDN 101


>03_05_0203 - 21951622-21951766,21951936-21952005,21952325-21952409
          Length = 99

 Score = 29.9 bits (64), Expect = 0.77
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +2

Query: 167 VVVGGISYYSYQTIKKAREAGNGQIKP-WNRRAFI 268
           + VGG + ++ Q  KK    G+G++KP  N++ FI
Sbjct: 10  LAVGGAAAFAVQPSKKTGSGGDGEVKPAGNKKKFI 44


>06_03_1176 - 28172230-28172547,28172691-28172849,28172962-28174194
          Length = 569

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +2

Query: 212 KAREAGNGQIKPWNRRAFIKVVDFMAIEVITEKASLCRCWR 334
           +A +    +I     +A ++++DF+ I+ +    SLC+ WR
Sbjct: 121 EAAKVDGDRITALQEKARVRILDFLPIKSVILMGSLCKRWR 161


>08_02_0610 + 19307537-19308011,19308187-19310846
          Length = 1044

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +2

Query: 194 SYQTIKKAREAGNGQIKPWNRRAFIKVVDFMAIEVITEKA 313
           +Y+T+ KA EA    +KP NR   +  V   A++VI + A
Sbjct: 261 AYETLMKAHEAALEALKPGNR---MSAVYQAAVDVIEKNA 297


>06_03_0934 -
           26073084-26073220,26073296-26073345,26073465-26073634,
           26073651-26073803,26073877-26074032,26074227-26074350,
           26075066-26075178,26076336-26076469,26077391-26077578,
           26077718-26078139
          Length = 548

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 230 NGQIKPWNRRAFIKVVDFMAIEVITEKAS 316
           NG   PW+R   +K +    I ++TEK +
Sbjct: 477 NGMRDPWSRGGVLKNISSSIIALVTEKGA 505


>06_03_0912 + 25896152-25896451,25896528-25897296,25897492-25897658,
            25898932-25901013,25901155-25901730,25904503-25905648,
            25907056-25908693
          Length = 2225

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 26   KSLKMYVVSNLVKVTIPNYLSSLPIPDSVGGW 121
            KS+    + N+ ++TI   + S P+P  + GW
Sbjct: 2096 KSIPHLELLNITELTIDKCVDSCPVPKCILGW 2127


>04_03_0357 + 14852584-14853058,14853116-14855754
          Length = 1037

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +2

Query: 194 SYQTIKKAREAGNGQIKPWNRRAFIKVVDFMAIEVITEKA 313
           +Y+T+ KA EA    +KP NR   +  V   A++VI + A
Sbjct: 301 AYETLMKAHEAALEALKPGNR---MSAVYQAAVDVIEKNA 337


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,131,000
Number of Sequences: 37544
Number of extensions: 194684
Number of successful extensions: 591
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)