Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0836X.Seq
(399 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52651| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_5194| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.2
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.3
SB_53453| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_57237| Best HMM Match : RRM_1 (HMM E-Value=0.071) 27 7.4
SB_20583| Best HMM Match : RCC1 (HMM E-Value=6.2e-08) 27 7.4
SB_1024| Best HMM Match : Ank (HMM E-Value=0) 27 7.4
SB_56161| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_58219| Best HMM Match : SOCS_box (HMM E-Value=2e-07) 26 9.8
>SB_52651| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 59
Score = 28.7 bits (61), Expect = 1.8
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 311 ASLCRCWRSKNWPYCDGSHGPHNKETGE 394
A LC C ++ PYCDG+H E E
Sbjct: 26 AFLCGCKQTGTPPYCDGTHASPMVEMAE 53
>SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3669
Score = 28.7 bits (61), Expect = 1.8
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = -3
Query: 298 NLNGHKVHNLNKGPPVPGFYLTIASFSGFFYCLVRVVRYTANY 170
N +G N+ PP+ G + + YC +R+ Y NY
Sbjct: 908 NTDGRNTKNITISPPIVGQFFRFYATKWQQYCALRMELYGCNY 950
>SB_5194| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 188
Score = 27.9 bits (59), Expect = 3.2
Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 2/71 (2%)
Frame = +2
Query: 176 GGISYYSYQTIKKAREAGNGQIK--PWNRRAFIKVVDFMAIEVITEKASLCRCWRSKNWP 349
G + YS T KK R +G + P F D + ++ CW NW
Sbjct: 67 GAVQVYSCDTGKKRRPLKHGSLYGLPVTTVKFFPFKDDRLMSTTSD--GTITCWDLDNWS 124
Query: 350 YCDGSHGPHNK 382
+ PHN+
Sbjct: 125 HMKSVDEPHNE 135
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 27.5 bits (58), Expect = 4.3
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = -1
Query: 180 PPTTTVGGISANQSLTPRR---NHPPTESGIGKLDR*LGMVTLTKLETTYIFKLLAK 19
PPT T IS+ Q++ P+R NHP T G+ + + ++ ++ Y+ L K
Sbjct: 1474 PPTFTTSLISSMQTIEPKRSQNNHPETSHEKGENTSSVTLSAISFPDSVYLKSLPEK 1530
>SB_53453| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 192
Score = 27.1 bits (57), Expect = 5.6
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Frame = -1
Query: 183 IPPTTTVGGISANQSLTPR----RNHPPTESGIGKLDR 82
I TT +AN SL+P R+HP T SGIG R
Sbjct: 42 IQSPTTKQQATANSSLSPLCALLRDHPGTRSGIGDSHR 79
>SB_57237| Best HMM Match : RRM_1 (HMM E-Value=0.071)
Length = 210
Score = 26.6 bits (56), Expect = 7.4
Identities = 20/67 (29%), Positives = 31/67 (46%)
Frame = +2
Query: 110 VGGWFRLGVKDWLALIPPTVVVGGISYYSYQTIKKAREAGNGQIKPWNRRAFIKVVDFMA 289
VGG + + LA I + GG+ Y T K G+G++ N ++F+ V
Sbjct: 103 VGGLHGMLNAEGLAYIM-NELFGGVVYAGIDTDKHRYPIGSGRVTFDNHKSFMNAVRAGF 161
Query: 290 IEVITEK 310
IE+ T K
Sbjct: 162 IEIETPK 168
>SB_20583| Best HMM Match : RCC1 (HMM E-Value=6.2e-08)
Length = 970
Score = 26.6 bits (56), Expect = 7.4
Identities = 18/65 (27%), Positives = 34/65 (52%)
Frame = +2
Query: 101 PDSVGGWFRLGVKDWLALIPPTVVVGGISYYSYQTIKKAREAGNGQIKPWNRRAFIKVVD 280
P+++ R+ V++ LA P ++ G ++ K RE+ Q++ RRAFI++ +
Sbjct: 851 PEALVKEMRVVVEERLASGPEPIIWGRLATLE----DKVRESREKQLEALERRAFIRLAN 906
Query: 281 FMAIE 295
IE
Sbjct: 907 ECGIE 911
>SB_1024| Best HMM Match : Ank (HMM E-Value=0)
Length = 891
Score = 26.6 bits (56), Expect = 7.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -3
Query: 262 GPPVPGFYLTIASFSGFFYCLVRVVRYTANYN 167
G PGF T A++ GF C+ ++ + A N
Sbjct: 352 GTRQPGFRETCAAYGGFVSCMSLLIEHGAKVN 383
>SB_56161| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 213
Score = 26.6 bits (56), Expect = 7.4
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -1
Query: 180 PPTTTVGGISANQSLTPRRNHPP 112
PP TT+G SA P N+PP
Sbjct: 155 PPQTTMGYPSAQPGFAPPGNYPP 177
>SB_58219| Best HMM Match : SOCS_box (HMM E-Value=2e-07)
Length = 507
Score = 26.2 bits (55), Expect = 9.8
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -2
Query: 389 QFLYYEDRDYHHNKANFYSSSI 324
Q++Y +D+DYHH + S I
Sbjct: 78 QYVYEDDKDYHHYDTDSESEEI 99
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,239,231
Number of Sequences: 59808
Number of extensions: 211367
Number of successful extensions: 593
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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