Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0836X.Seq
(399 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BX537971-1|CAD97935.1| 150|Homo sapiens hypothetical protein pr... 95 6e-20
BC032300-1|AAH32300.1| 135|Homo sapiens CDGSH iron sulfur domai... 95 6e-20
BC059168-1|AAH59168.1| 108|Homo sapiens CDGSH iron sulfur domai... 68 1e-11
BC008474-1|AAH08474.1| 108|Homo sapiens zinc finger, CDGSH-type... 68 1e-11
BC007043-1|AAH07043.1| 108|Homo sapiens zinc finger, CDGSH-type... 68 1e-11
BC005962-1|AAH05962.1| 108|Homo sapiens zinc finger, CDGSH-type... 68 1e-11
AY960578-1|AAY32336.1| 108|Homo sapiens zinc finger CDGSH-type ... 68 1e-11
AF220049-1|AAF67642.1| 108|Homo sapiens uncharacterized hematop... 68 1e-11
BC003517-1|AAH03517.2| 533|Homo sapiens ATXN7L1 protein protein. 32 0.61
BC050629-1|AAH50629.1| 561|Homo sapiens cytoplasmic polyadenyla... 30 2.5
BC035348-1|AAH35348.1| 486|Homo sapiens cytoplasmic polyadenyla... 30 2.5
AK023265-1|BAB14496.1| 486|Homo sapiens protein ( Homo sapiens ... 30 2.5
AF329403-1|AAK01240.1| 491|Homo sapiens cytoplasmic polyadenyla... 30 2.5
AF329402-1|AAK01239.1| 566|Homo sapiens cytoplasmic polyadenyla... 30 2.5
>BX537971-1|CAD97935.1| 150|Homo sapiens hypothetical protein
protein.
Length = 150
Score = 95.5 bits (227), Expect = 6e-20
Identities = 48/119 (40%), Positives = 74/119 (62%), Gaps = 2/119 (1%)
Frame = +2
Query: 47 VSNLVKVTIPNYLSSLPIPDSVGGWFRLGVKDWLALIPPTVVVGGISYYSYQT-IKKARE 223
V+ +VKV +P YL LP+P+S+ G+ RL V +WL L+P V+ + Y + + + K ++
Sbjct: 21 VARIVKVQLPAYLKRLPVPESITGFARLTVSEWLRLLPFLGVLALLGYLAVRPFLPKKKQ 80
Query: 224 AGNGQIKPWNRRAFIKVVDFMAIE-VITEKASLCRCWRSKNWPYCDGSHGPHNKETGEN 397
+ I ++ KVV+ + IE + KA+ CRCWRSK +P CDGSH HN+ TG+N
Sbjct: 81 QKDSLINLKIQKENPKVVNEINIEDLCLTKAAYCRCWRSKTFPACDGSHNKHNELTGDN 139
>BC032300-1|AAH32300.1| 135|Homo sapiens CDGSH iron sulfur domain 2
protein.
Length = 135
Score = 95.5 bits (227), Expect = 6e-20
Identities = 48/119 (40%), Positives = 74/119 (62%), Gaps = 2/119 (1%)
Frame = +2
Query: 47 VSNLVKVTIPNYLSSLPIPDSVGGWFRLGVKDWLALIPPTVVVGGISYYSYQT-IKKARE 223
V+ +VKV +P YL LP+P+S+ G+ RL V +WL L+P V+ + Y + + + K ++
Sbjct: 6 VARIVKVQLPAYLKRLPVPESITGFARLTVSEWLRLLPFLGVLALLGYLAVRPFLPKKKQ 65
Query: 224 AGNGQIKPWNRRAFIKVVDFMAIE-VITEKASLCRCWRSKNWPYCDGSHGPHNKETGEN 397
+ I ++ KVV+ + IE + KA+ CRCWRSK +P CDGSH HN+ TG+N
Sbjct: 66 QKDSLINLKIQKENPKVVNEINIEDLCLTKAAYCRCWRSKTFPACDGSHNKHNELTGDN 124
>BC059168-1|AAH59168.1| 108|Homo sapiens CDGSH iron sulfur domain 1
protein.
Length = 108
Score = 67.7 bits (158), Expect = 1e-11
Identities = 29/86 (33%), Positives = 45/86 (52%)
Frame = +2
Query: 140 DWLALIPPTVVVGGISYYSYQTIKKAREAGNGQIKPWNRRAFIKVVDFMAIEVITEKASL 319
+W+A + I Y +Y+ I ++ K+V +E + +KA
Sbjct: 12 EWIAAVTIAAGTAAIGYLAYKRFYVKDHRNKAMINLHIQKDNPKIVHAFDMEDLGDKAVY 71
Query: 320 CRCWRSKNWPYCDGSHGPHNKETGEN 397
CRCWRSK +P+CDG+H HN+ETG+N
Sbjct: 72 CRCWRSKKFPFCDGAHTKHNEETGDN 97
>BC008474-1|AAH08474.1| 108|Homo sapiens zinc finger, CDGSH-type
domain 1 protein.
Length = 108
Score = 67.7 bits (158), Expect = 1e-11
Identities = 29/86 (33%), Positives = 45/86 (52%)
Frame = +2
Query: 140 DWLALIPPTVVVGGISYYSYQTIKKAREAGNGQIKPWNRRAFIKVVDFMAIEVITEKASL 319
+W+A + I Y +Y+ I ++ K+V +E + +KA
Sbjct: 12 EWIAAVTIAAGTAAIGYLAYKRFYVKDHRNKAMINLHIQKDNPKIVHAFDMEDLGDKAVY 71
Query: 320 CRCWRSKNWPYCDGSHGPHNKETGEN 397
CRCWRSK +P+CDG+H HN+ETG+N
Sbjct: 72 CRCWRSKKFPFCDGAHTKHNEETGDN 97
>BC007043-1|AAH07043.1| 108|Homo sapiens zinc finger, CDGSH-type
domain 1 protein.
Length = 108
Score = 67.7 bits (158), Expect = 1e-11
Identities = 29/86 (33%), Positives = 45/86 (52%)
Frame = +2
Query: 140 DWLALIPPTVVVGGISYYSYQTIKKAREAGNGQIKPWNRRAFIKVVDFMAIEVITEKASL 319
+W+A + I Y +Y+ I ++ K+V +E + +KA
Sbjct: 12 EWIAAVTIAAGTAAIGYLAYKRFYVKDHRNKAMINLHIQKDNPKIVHAFDMEDLGDKAVY 71
Query: 320 CRCWRSKNWPYCDGSHGPHNKETGEN 397
CRCWRSK +P+CDG+H HN+ETG+N
Sbjct: 72 CRCWRSKKFPFCDGAHTKHNEETGDN 97
>BC005962-1|AAH05962.1| 108|Homo sapiens zinc finger, CDGSH-type
domain 1 protein.
Length = 108
Score = 67.7 bits (158), Expect = 1e-11
Identities = 29/86 (33%), Positives = 45/86 (52%)
Frame = +2
Query: 140 DWLALIPPTVVVGGISYYSYQTIKKAREAGNGQIKPWNRRAFIKVVDFMAIEVITEKASL 319
+W+A + I Y +Y+ I ++ K+V +E + +KA
Sbjct: 12 EWIAAVTIAAGTAAIGYLAYKRFYVKDHRNKAMINLHIQKDNPKIVHAFDMEDLGDKAVY 71
Query: 320 CRCWRSKNWPYCDGSHGPHNKETGEN 397
CRCWRSK +P+CDG+H HN+ETG+N
Sbjct: 72 CRCWRSKKFPFCDGAHTKHNEETGDN 97
>AY960578-1|AAY32336.1| 108|Homo sapiens zinc finger CDGSH-type
domain 1 protein.
Length = 108
Score = 67.7 bits (158), Expect = 1e-11
Identities = 29/86 (33%), Positives = 45/86 (52%)
Frame = +2
Query: 140 DWLALIPPTVVVGGISYYSYQTIKKAREAGNGQIKPWNRRAFIKVVDFMAIEVITEKASL 319
+W+A + I Y +Y+ I ++ K+V +E + +KA
Sbjct: 12 EWIAAVTIAAGTAAIGYLAYKRFYVKDHRNKAMINLHIQKDNPKIVHAFDMEDLGDKAVY 71
Query: 320 CRCWRSKNWPYCDGSHGPHNKETGEN 397
CRCWRSK +P+CDG+H HN+ETG+N
Sbjct: 72 CRCWRSKKFPFCDGAHTKHNEETGDN 97
>AF220049-1|AAF67642.1| 108|Homo sapiens uncharacterized
hematopoietic stem/progenitor cells protein MDS029
protein.
Length = 108
Score = 67.7 bits (158), Expect = 1e-11
Identities = 29/86 (33%), Positives = 45/86 (52%)
Frame = +2
Query: 140 DWLALIPPTVVVGGISYYSYQTIKKAREAGNGQIKPWNRRAFIKVVDFMAIEVITEKASL 319
+W+A + I Y +Y+ I ++ K+V +E + +KA
Sbjct: 12 EWIAAVTIAAGTAAIGYLAYKRFYVKDHRNKAMINLHIQKDNPKIVHAFDMEDLGDKAVY 71
Query: 320 CRCWRSKNWPYCDGSHGPHNKETGEN 397
CRCWRSK +P+CDG+H HN+ETG+N
Sbjct: 72 CRCWRSKKFPFCDGAHTKHNEETGDN 97
>BC003517-1|AAH03517.2| 533|Homo sapiens ATXN7L1 protein protein.
Length = 533
Score = 32.3 bits (70), Expect = 0.61
Identities = 22/74 (29%), Positives = 37/74 (50%)
Frame = +2
Query: 26 KSLKMYVVSNLVKVTIPNYLSSLPIPDSVGGWFRLGVKDWLALIPPTVVVGGISYYSYQT 205
K KM ++++ K P+ L+ P+PD V V+D LA PP+ +GG ++
Sbjct: 451 KITKMPGMNSVHKKNPPSLLA--PVPDPVNSTSSRQVRDLLA--PPSPALGGRGSWAAPL 506
Query: 206 IKKAREAGNGQIKP 247
+ +A GN + P
Sbjct: 507 LSRAAPTGNTSLIP 520
>BC050629-1|AAH50629.1| 561|Homo sapiens cytoplasmic
polyadenylation element binding protein 1 protein.
Length = 561
Score = 30.3 bits (65), Expect = 2.5
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 176 GGISYYSYQTIKKAREAGNGQIKPWNRRAFIKVVDFMAIEVITEK 310
GG+ Y T K G+G++ N+R+++K V +E+ T K
Sbjct: 450 GGVVYAGIDTDKHKYPIGSGRVTFNNQRSYLKAVSAAFVEIKTTK 494
>BC035348-1|AAH35348.1| 486|Homo sapiens cytoplasmic
polyadenylation element binding protein 1 protein.
Length = 486
Score = 30.3 bits (65), Expect = 2.5
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 176 GGISYYSYQTIKKAREAGNGQIKPWNRRAFIKVVDFMAIEVITEK 310
GG+ Y T K G+G++ N+R+++K V +E+ T K
Sbjct: 375 GGVVYAGIDTDKHKYPIGSGRVTFNNQRSYLKAVSAAFVEIKTTK 419
>AK023265-1|BAB14496.1| 486|Homo sapiens protein ( Homo sapiens
cDNA FLJ13203 fis, clone NT2RP3004504, highly similar to
M.musculus mRNA for CPEB protein. ).
Length = 486
Score = 30.3 bits (65), Expect = 2.5
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 176 GGISYYSYQTIKKAREAGNGQIKPWNRRAFIKVVDFMAIEVITEK 310
GG+ Y T K G+G++ N+R+++K V +E+ T K
Sbjct: 375 GGVVYAGIDTDKHKYPIGSGRVTFNNQRSYLKAVSAAFVEIKTTK 419
>AF329403-1|AAK01240.1| 491|Homo sapiens cytoplasmic
polyadenylation element-binding protein short form
protein.
Length = 491
Score = 30.3 bits (65), Expect = 2.5
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 176 GGISYYSYQTIKKAREAGNGQIKPWNRRAFIKVVDFMAIEVITEK 310
GG+ Y T K G+G++ N+R+++K V +E+ T K
Sbjct: 380 GGVVYAGIDTDKHKYPIGSGRVTFNNQRSYLKAVSAAFVEIKTTK 424
>AF329402-1|AAK01239.1| 566|Homo sapiens cytoplasmic
polyadenylation element-binding protein long form
protein.
Length = 566
Score = 30.3 bits (65), Expect = 2.5
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 176 GGISYYSYQTIKKAREAGNGQIKPWNRRAFIKVVDFMAIEVITEK 310
GG+ Y T K G+G++ N+R+++K V +E+ T K
Sbjct: 455 GGVVYAGIDTDKHKYPIGSGRVTFNNQRSYLKAVSAAFVEIKTTK 499
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,611,319
Number of Sequences: 237096
Number of extensions: 1111887
Number of successful extensions: 2644
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2642
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2870859500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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