Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0836X.Seq
         (399 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51720.1 68418.m06414 expressed protein                             62   1e-10
At5g27890.1 68418.m03347 expressed protein                             31   0.37 
At5g52150.1 68418.m06474 zinc finger (C3HC4-type RING finger) fa...    29   1.1  
At2g32500.1 68415.m03971 expressed protein                             28   2.0  
At1g11130.1 68414.m01274 leucine-rich repeat family protein / pr...    28   2.6  
At3g59380.1 68416.m06622 farnesyltransferase alpha subunit, puta...    27   6.1  
At5g56970.1 68418.m07111 FAD-binding domain-containing protein /...    26   8.0  
At5g03010.1 68418.m00247 kelch repeat-containing protein contain...    26   8.0  
At3g60160.1 68416.m06717 ABC transporter family protein similar ...    26   8.0  
At1g21630.1 68414.m02708 calcium-binding EF hand family protein ...    26   8.0  

>At5g51720.1 68418.m06414 expressed protein
          Length = 108

 Score = 62.1 bits (144), Expect = 1e-10
 Identities = 32/82 (39%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
 Frame = +2

Query: 155 IPPTVVVGGISYYSYQTIKKAREAGNGQIKPWNRRAFIKVVDFMAIEVITEKAS-LCRCW 331
           +P   V GG      Q +   R  G G I P  R+   KVVD + +  +++  +  CRCW
Sbjct: 18  LPFKPVTGGEVGRKQQRMVVVRAEGGGGINPEIRKNEDKVVDSVVVTELSKNITPYCRCW 77

Query: 332 RSKNWPYCDGSHGPHNKETGEN 397
           RS  +P CDGSH  HNK  G+N
Sbjct: 78  RSGTFPLCDGSHVKHNKANGDN 99


>At5g27890.1 68418.m03347 expressed protein
          Length = 399

 Score = 30.7 bits (66), Expect = 0.37
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 186 DIPPTTTVGGISANQSLTPRRNHPPTESGIGKLDR 82
           D  P    GGISA+ +    R+H P+ S +GK  R
Sbjct: 154 DFRPRGAFGGISASLAAVRTRDHSPSSSEMGKASR 188


>At5g52150.1 68418.m06474 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 200

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 196 LPDNKKSQRSWQWSNKTLEPE 258
           LP  K S+++W WS KT  P+
Sbjct: 140 LPTQKYSRKTWWWSKKTFVPD 160


>At2g32500.1 68415.m03971 expressed protein
          Length = 276

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +2

Query: 230 NGQIKPWNRRAFIKVVDFMAIEVITEKASLCRCWRSKNWPYCDGSHGPH 376
           NG  K +   A ++   F A+E+  E       WRS+  P+ + S   H
Sbjct: 217 NGSSKEFTHAAVVRFRSFDAMEIFFEGREYKDMWRSQFEPFIEKSEALH 265


>At1g11130.1 68414.m01274 leucine-rich repeat family protein /
           protein kinase family protein contains leucine
           rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to leucine-rich
           repeat transmembrane protein kinase 2 [Zea mays]
           gi|3360291|gb|AAC27895
          Length = 768

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +2

Query: 203 TIKKAREAGNGQIKPWNRRAFIKVVDFMAIEVITEK--ASLCRCWRSK 340
           T++ +  +G+G  K W+ +  I VV  +AI V+      +L RC RSK
Sbjct: 322 TLQISPPSGSGSGKFWSTQRIILVVSSVAIIVLVSGLCVTLWRCCRSK 369


>At3g59380.1 68416.m06622 farnesyltransferase alpha subunit,
           putative / FTA, putative / protein farnesyltransferase,
           putative similar to farnesyltransferase alpha subunit
           [GI:2246442][Pisum sativum]
          Length = 326

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 127 SWS*RLVSTDSAYSCSWRYILLLLPDNKKS 216
           S++ + + T+ A   SWRY+  L  D+K+S
Sbjct: 207 SYTIKAILTNPANESSWRYLKALYKDDKES 236


>At5g56970.1 68418.m07111 FAD-binding domain-containing protein /
           cytokinin oxidase family protein similar to cytokinin
           oxidase from Zea mays [gi:3882018] [gi:3341978]
          Length = 523

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = +2

Query: 143 WLALIPPTVVVG--GISYYSYQTIKKAREAGNGQIKPWNRRAFIKVVDFMAIEVITEKAS 316
           W+ ++  T+ +G   +S+  Y  +       NG I     R   ++ + + ++VIT K  
Sbjct: 148 WIEVLNKTLELGLTPVSWTDYLYLTVGGTLSNGGISGQTFRYGPQITNVLEMDVITGKGE 207

Query: 317 LCRCWRSKN 343
           +  C +  N
Sbjct: 208 IATCSKDMN 216


>At5g03010.1 68418.m00247 kelch repeat-containing protein contains
           Pfam PF01344: Kelch motif (1 repeat)
          Length = 232

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 194 SYQTIKKAREAGNGQIKPWNRRAFIKVVDFMAIEVITEKASLCRC 328
           SYQ +  A  AG G++  W  ++ +KV+D ++     E  +  RC
Sbjct: 145 SYQLVSVANAAGGGRVTVW-WKSGLKVLDLLSGTETWECYTNIRC 188


>At3g60160.1 68416.m06717 ABC transporter family protein similar to
           ATP-binding cassette transporter MRP8 GI:18031899 from
           [Arabidopsis thaliana]
          Length = 1490

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 67  NHSQLSVELANSRFCWRMVSS 129
           +H++LSVE+ N  F W   SS
Sbjct: 624 DHTELSVEIENGAFSWEPESS 644


>At1g21630.1 68414.m02708 calcium-binding EF hand family protein
           contains INTERPRO:IPR002048 calcium-binding EF-hand
           domain; ESTs gb|T44428 and gb|AA395440 come from this
           gene
          Length = 1218

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -1

Query: 180 PPTTTVG-GISANQSLTPRRNHPPTE 106
           PP +TVG GISA   L  R  HP ++
Sbjct: 379 PPGSTVGVGISATSQLAQRPPHPHSQ 404


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,128,423
Number of Sequences: 28952
Number of extensions: 156112
Number of successful extensions: 439
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)